SMTL ID : 7qfx.2 (1 other biounit)

Crystal structure of Old Yellow Enzyme AnOYE8 from Aspergillus niger

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 3 residues within 4Å: Chain A: G.260, E.261, H.262 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:E.261 Hydrogen bonds: A:E.261, A:H.262

2 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.2: 19 residues within 4Å: Chain A: S.57, P.58, M.59, C.60, E.91, A.92, Q.134, H.215, H.218, R.268, V.344, G.345, H.346, V.367, G.368, R.369 Chain B: W.397, Y.415 Ligands: SO4.3 18 PLIP interactions: 2 interactions with chain B, 16 interactions with chain A Hydrophobic interactions: B:W.397, A:M.59 Hydrogen bonds: B:Y.415, A:S.57, A:P.58, A:C.60, A:A.92, A:Q.134, A:Q.134, A:H.218, A:R.268, A:R.268, A:G.345, A:H.346, A:G.368, A:R.369, A:R.369 Salt bridges: A:R.369 FMN.4: 18 residues within 4Å: Chain A: W.397, Y.415 Chain B: S.57, P.58, M.59, C.60, E.91, A.92, Q.134, H.215, R.268, V.344, G.345, H.346, V.367, G.368, R.369 Ligands: SO4.5 16 PLIP interactions: 14 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:M.59, B:R.369, A:W.397 Hydrogen bonds: B:P.58, B:C.60, B:A.92, B:Q.134, B:Q.134, B:R.268, B:R.268, B:G.345, B:H.346, B:G.368, B:R.369, A:Y.415 Salt bridges: B:R.369

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: I.101, H.215, H.218, Y.220 Ligands: FMN.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.220, A:Y.220 Salt bridges: A:H.215, A:H.218 SO4.5: 4 residues within 4Å: Chain B: H.215, H.218, Y.220 Ligands: FMN.4 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.220 Salt bridges: B:H.215, B:H.218

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Robescu, M.S. et al., The Family Keeps on Growing: Four Novel Fungal OYEs Characterized. Int J Mol Sci (2022)

Release Date

2022-04-20

Peptides

NADH-dependent flavin oxidoreductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
G

NADH-dependent flavin oxidoreductase

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