SMTL ID : 7qg6.1 (3 other biounits)

Co-crystal structure of UPF3A-RRM-NOPS-L with UPF2-MIF4GIII

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

hetero-4-4-mer

Ligands

3 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.1: 3 residues within 4Å: Chain B: Y.88, Q.133, M.242 No protein-ligand interaction detected (PLIP) PGE.2: 5 residues within 4Å: Chain D: Y.88, C.190, T.191, D.194, M.242 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:D.194, D:D.194 PGE.3: 4 residues within 4Å: Chain F: Y.88, I.136, T.191, M.242 No protein-ligand interaction detected (PLIP)

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 2 residues within 4Å: Chain F: L.183, F.184 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bufton, J.C. et al., Structures of nonsense-mediated mRNA decay factors UPF3B and UPF3A in complex with UPF2 reveal molecular basis for competitive binding and for neurodevelopmental disorder-causing mutation. Nucleic Acids Res. (2022)

Release Date

2022-07-20

Peptides

Regulator of nonsense transcripts 3A: ACEG
Regulator of nonsense transcripts 2: BDFH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

C
A

E
E

G
G

B
D

D
B

F
F

H
H

Regulator of nonsense transcripts 3A

Regulator of nonsense transcripts 2

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