SMTL ID : 7qho.1

Cytochrome bcc-aa3 supercomplex (respiratory supercomplex III2/IV2) from Corynebacterium glutamicum (as isolated)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-mer

Ligands

2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)

FES.1: 10 residues within 4Å: Chain A: C.333, H.335, I.336, G.337, C.338, C.352, C.354, H.355, S.357, P.371 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.333, A:H.335, A:C.352, A:H.355 FES.42: 10 residues within 4Å: Chain N: C.333, H.335, I.336, G.337, C.338, C.352, C.354, H.355, S.357, P.371 4 PLIP interactions: 4 interactions with chain N, Metal complexes: N:C.333, N:H.335, N:C.352, N:H.355

2 x IZL: [(2~{R})-3-[[(1~{S},2~{R},3~{S},4~{S},5~{R},6~{R})-2-[(2~{R},3~{S},4~{S},5~{S},6~{R})-6-[[(2~{S},3~{S},4~{S},5~{S},6~{R})-6-[[(2~{S},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3-[(2~{R},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-4,5-bis(oxidanyl)oxan-2-yl]oxymethyl]-3,4,5-tris(oxidanyl)oxan-2-yl]oxymethyl]-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3,4,5-tris(oxidanyl)-6-[(2~{R},3~{S},4~{S},5~{S},6~{R})-3,4,5-tris(oxidanyl)-6-(undecanoyloxymethyl)oxan-2-yl]oxy-cyclohexyl]oxy-oxidanyl-phosphoryl]oxy-2-undecanoyloxy-propyl] (10~{R})-10-methyldodecanoate(Non-covalent)

IZL.2: 23 residues within 4Å: Chain A: I.186, N.188, W.190, W.206, T.207, T.211, E.214, N.394, F.395, I.396, E.397, P.398, W.404, E.405, R.406, K.407 Chain B: I.177, I.178, T.180, W.181, M.182, N.317, Y.318 15 PLIP interactions: 6 interactions with chain B, 9 interactions with chain A Hydrophobic interactions: B:I.178, B:W.181, B:W.181 Hydrogen bonds: B:W.181, B:N.317, B:N.317, A:W.190, A:W.206, A:W.206, A:W.206, A:N.394, A:W.404, A:E.405, A:E.405, A:K.407 IZL.43: 23 residues within 4Å: Chain N: I.186, N.188, W.190, W.206, T.207, T.211, E.214, N.394, F.395, I.396, E.397, P.398, W.404, E.405, R.406, K.407 Chain O: I.177, I.178, T.180, W.181, M.182, N.317, Y.318 15 PLIP interactions: 9 interactions with chain N, 6 interactions with chain O Hydrogen bonds: N:W.190, N:W.206, N:W.206, N:W.206, N:N.394, N:W.404, N:E.405, N:E.405, N:K.407, O:W.181, O:N.317, O:N.317 Hydrophobic interactions: O:I.178, O:W.181, O:W.181

4 x 9YF: (2R)-2-(hexadecanoyloxy)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9S)-9-methyloctadecanoate(Non-covalent)

9YF.3: 17 residues within 4Å: Chain A: L.176, I.179, A.180, G.183, G.184, I.186, K.187, N.188, N.191 Chain B: W.181 Chain N: L.71, Y.74, I.75, W.79 Chain O: E.92, V.93, R.94 10 PLIP interactions: 5 interactions with chain A, 1 interactions with chain N, 4 interactions with chain O Hydrophobic interactions: A:L.176, A:I.186, N:I.75 Hydrogen bonds: A:G.183, A:N.188, A:N.191, O:R.94, O:R.94, O:R.94 Salt bridges: O:R.94 9YF.12: 18 residues within 4Å: Chain B: S.396, N.398, A.399, W.402, I.403, I.406, G.407 Chain C: S.192 Chain H: C.1, S.2, I.6, Q.8 Chain I: V.59, E.60, W.63, I.67 Ligands: DGA.33, IX7.36 11 PLIP interactions: 2 interactions with chain I, 6 interactions with chain B, 1 interactions with chain H, 2 interactions with chain C Hydrophobic interactions: I:W.63, I:W.63, B:W.402, B:I.403, B:I.406, B:I.406 Hydrogen bonds: B:S.396, B:N.398, H:Q.8, C:S.192, C:S.192 9YF.44: 17 residues within 4Å: Chain A: L.71, Y.74, I.75, W.79 Chain B: E.92, V.93, R.94 Chain N: L.176, I.179, A.180, G.183, G.184, I.186, K.187, N.188, N.191 Chain O: W.181 10 PLIP interactions: 5 interactions with chain N, 1 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: N:L.176, N:I.186, A:I.75 Hydrogen bonds: N:G.183, N:N.188, N:N.191, B:R.94, B:R.94, B:R.94 Salt bridges: B:R.94 9YF.74: 18 residues within 4Å: Chain O: S.396, N.398, A.399, W.402, I.403, I.406, G.407 Chain P: S.192 Chain U: C.1, S.2, I.6, Q.8 Chain V: V.59, E.60, W.63, I.67 Ligands: IX7.67, DGA.72 12 PLIP interactions: 7 interactions with chain O, 2 interactions with chain V, 2 interactions with chain P, 1 interactions with chain U Hydrophobic interactions: O:A.399, O:W.402, O:I.403, O:I.406, O:I.406, V:W.63, V:W.63 Hydrogen bonds: O:S.396, O:N.398, P:S.192, P:S.192, U:Q.8

6 x MQ9: MENAQUINONE-9(Non-covalent)

MQ9.4: 20 residues within 4Å: Chain A: T.177, I.178, I.179, A.180, P.181, M.182 Chain B: I.207, I.211 Chain N: F.70, S.103 Chain O: V.46, L.49, T.50, V.52, Y.53, F.98, I.99, M.102, F.262, A.266 6 PLIP interactions: 5 interactions with chain O, 1 interactions with chain A Hydrophobic interactions: O:L.49, O:L.49, O:T.50, O:V.52, O:F.262, A:P.181 MQ9.6: 17 residues within 4Å: Chain A: H.355 Chain B: I.143, F.150, G.164, I.167, M.168, I.171, P.294, M.298, W.300, T.301, D.302, A.305, A.327, L.330, G.331, V.334 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:I.167, B:I.171, B:P.294, B:D.302, B:A.327, B:L.330 Hydrogen bonds: B:T.301 MQ9.9: 15 residues within 4Å: Chain B: F.28, E.38, L.41, Y.42, I.45, L.220, V.223, W.224, F.250, A.254, V.255, G.258, L.259, F.262 Ligands: HEM.8 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:Y.42, B:L.220, B:F.250, B:A.254, B:V.255 MQ9.40: 19 residues within 4Å: Chain A: F.70, S.103 Chain B: V.46, L.49, T.50, V.52, Y.53, F.98, I.99, M.102, F.262, A.266 Chain N: T.177, I.178, A.180, P.181, M.182 Chain O: I.207, I.211 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain N Hydrophobic interactions: B:L.49, B:L.49, B:T.50, B:V.52, B:F.262, N:P.181 MQ9.46: 17 residues within 4Å: Chain N: H.355 Chain O: I.143, F.150, G.164, I.167, M.168, I.171, P.294, M.298, W.300, T.301, D.302, A.305, A.327, L.330, G.331, V.334 7 PLIP interactions: 7 interactions with chain O Hydrophobic interactions: O:I.167, O:I.171, O:P.294, O:D.302, O:A.327, O:L.330 Hydrogen bonds: O:T.301 MQ9.49: 15 residues within 4Å: Chain O: F.28, E.38, L.41, Y.42, I.45, L.220, V.223, W.224, F.250, A.254, V.255, G.258, L.259, F.262 Ligands: HEM.48 5 PLIP interactions: 5 interactions with chain O Hydrophobic interactions: O:Y.42, O:L.220, O:F.250, O:A.254, O:V.255

10 x 3PE: 1,2-Distearoyl-sn-glycerophosphoethanolamine(Non-covalent)

3PE.5: 19 residues within 4Å: Chain A: V.145, L.148, N.149, S.151, W.152, Q.153, S.155, L.157, A.167 Chain N: V.114, Y.117, I.122 Chain O: M.1, L.3, A.4, M.247, P.248, V.252 Ligands: LMT.45 11 PLIP interactions: 3 interactions with chain N, 2 interactions with chain O, 6 interactions with chain A Hydrophobic interactions: N:V.114, N:Y.117, N:Y.117, O:V.252, O:V.252, A:W.152, A:W.152, A:W.152, A:L.157, A:L.157 Hydrogen bonds: A:Q.153 3PE.24: 15 residues within 4Å: Chain D: W.356, I.361, V.364, G.365, A.368, F.436, W.437, F.440 Chain E: I.55, F.56, K.61 Chain L: L.51, A.55, N.58, S.59 12 PLIP interactions: 7 interactions with chain D, 4 interactions with chain L, 1 interactions with chain E Hydrophobic interactions: D:W.356, D:I.361, D:V.364, D:W.437, D:W.437, D:W.437, D:F.440, L:L.51, L:A.55, E:I.55 Hydrogen bonds: L:N.58, L:S.59 3PE.29: 11 residues within 4Å: Chain D: K.289, F.292, V.346, G.347, W.350, K.351 Chain E: L.50, L.75, N.78, L.81, L.85 9 PLIP interactions: 6 interactions with chain D, 3 interactions with chain E Hydrophobic interactions: D:F.292, D:V.346, D:W.350, D:W.350, D:W.350, E:L.50, E:L.81 Salt bridges: D:K.351 Hydrogen bonds: E:N.78 3PE.30: 13 residues within 4Å: Chain D: Y.237, L.241 Chain F: Y.123, V.127, T.132, I.133, Q.134, F.143, G.147, F.148, L.151 Chain G: F.113, Y.115 6 PLIP interactions: 5 interactions with chain F, 1 interactions with chain D Hydrophobic interactions: F:Y.123, F:F.143, F:F.148, D:L.241 Hydrogen bonds: F:T.132, F:Q.134 3PE.37: 35 residues within 4Å: Chain D: V.295, G.296, F.299, A.300, L.302, S.303, A.306, L.307, L.333, V.336, P.337, V.340, H.560 Chain E: Y.77, V.79, E.82, L.83, T.86, I.90 Chain G: G.10, P.11 Chain J: A.26, Y.27, S.33, L.34, T.39, M.43, G.44, L.46, L.47, I.94, R.98, Y.101, T.111, Q.112 11 PLIP interactions: 1 interactions with chain E, 6 interactions with chain D, 4 interactions with chain J Hydrophobic interactions: E:V.79, D:V.295, D:F.299, D:F.299, D:A.306, D:L.307, D:V.336, J:L.47, J:L.47 Hydrogen bonds: J:Y.27, J:S.33 3PE.41: 19 residues within 4Å: Chain A: V.114, Y.117, I.122 Chain B: M.1, L.3, A.4, M.247, P.248, V.252 Chain N: V.145, L.148, N.149, S.151, W.152, Q.153, S.155, L.157, A.167 Ligands: LMT.13 11 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B, 6 interactions with chain N Hydrophobic interactions: A:V.114, A:Y.117, A:Y.117, B:V.252, B:V.252, N:W.152, N:W.152, N:W.152, N:L.157, N:L.157 Hydrogen bonds: N:Q.153 3PE.61: 15 residues within 4Å: Chain Q: W.356, I.361, V.364, G.365, A.368, F.436, W.437, F.440 Chain R: I.55, F.56, K.61 Chain Y: L.51, A.55, N.58, S.59 12 PLIP interactions: 7 interactions with chain Q, 4 interactions with chain Y, 1 interactions with chain R Hydrophobic interactions: Q:W.356, Q:I.361, Q:V.364, Q:W.437, Q:W.437, Q:W.437, Q:F.440, Y:L.51, Y:A.55, R:I.55 Hydrogen bonds: Y:N.58, Y:S.59 3PE.66: 11 residues within 4Å: Chain Q: K.289, F.292, V.346, G.347, W.350, K.351 Chain R: L.50, L.75, N.78, L.81, L.85 9 PLIP interactions: 6 interactions with chain Q, 3 interactions with chain R Hydrophobic interactions: Q:F.292, Q:V.346, Q:W.350, Q:W.350, Q:W.350, R:L.50, R:L.81 Salt bridges: Q:K.351 Hydrogen bonds: R:N.78 3PE.68: 13 residues within 4Å: Chain Q: Y.237, L.241 Chain S: Y.123, V.127, T.132, I.133, Q.134, F.143, G.147, F.148, L.151 Chain T: F.113, Y.115 6 PLIP interactions: 5 interactions with chain S, 1 interactions with chain Q Hydrophobic interactions: S:Y.123, S:F.143, S:F.148, Q:L.241 Hydrogen bonds: S:T.132, S:Q.134 3PE.76: 35 residues within 4Å: Chain Q: V.295, G.296, F.299, A.300, L.302, S.303, A.306, L.307, L.333, V.336, P.337, V.340, H.560 Chain R: Y.77, V.79, E.82, L.83, T.86, I.90 Chain T: G.10, P.11 Chain W: A.26, Y.27, S.33, L.34, T.39, M.43, G.44, L.46, L.47, I.94, R.98, Y.101, T.111, Q.112 11 PLIP interactions: 6 interactions with chain Q, 4 interactions with chain W, 1 interactions with chain R Hydrophobic interactions: Q:V.295, Q:F.299, Q:F.299, Q:A.306, Q:L.307, Q:V.336, W:L.47, W:L.47, R:V.79 Hydrogen bonds: W:Y.27, W:S.33

4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.7: 30 residues within 4Å: Chain B: F.44, L.47, L.48, G.51, V.52, L.54, T.55, F.58, I.89, R.100, H.103, H.104, A.107, F.110, V.111, G.145, E.148, G.149, G.152, Y.153, L.155, P.156, Y.201, H.204, V.205, P.209, L.212, N.275, Y.297 Chain O: L.206 16 PLIP interactions: 16 interactions with chain B, Hydrophobic interactions: B:L.47, B:L.47, B:L.48, B:F.58, B:F.58, B:F.110, B:E.148, B:Y.153, B:V.205, B:V.205, B:P.209 Hydrogen bonds: B:N.275 Salt bridges: B:R.100, B:H.104 Metal complexes: B:H.103, B:H.204 HEM.8: 32 residues within 4Å: Chain B: F.28, S.33, F.34, M.35, L.36, G.37, E.38, A.40, L.41, F.110, M.114, H.117, M.118, R.120, I.121, A.126, F.127, R.131, N.134, W.135, G.138, V.139, L.141, I.142, I.216, H.219, L.220, V.223, H.228, T.229, L.357 Ligands: MQ9.9 25 PLIP interactions: 25 interactions with chain B, Hydrophobic interactions: B:F.110, B:M.118, B:I.121, B:I.121, B:I.121, B:A.126, B:N.134, B:W.135, B:L.141, B:I.142, B:I.216, B:V.223, B:V.223 Hydrogen bonds: B:G.37, B:T.229, B:T.229 Salt bridges: B:H.117, B:R.120, B:R.120, B:R.131, B:H.228, B:H.228 pi-Cation interactions: B:H.117 Metal complexes: B:H.117, B:H.219 HEM.47: 30 residues within 4Å: Chain B: L.206 Chain O: F.44, L.47, L.48, G.51, V.52, L.54, T.55, F.58, I.89, R.100, H.103, H.104, A.107, F.110, V.111, G.145, E.148, G.149, G.152, Y.153, L.155, P.156, Y.201, H.204, V.205, P.209, L.212, N.275, Y.297 16 PLIP interactions: 16 interactions with chain O, Hydrophobic interactions: O:L.47, O:L.47, O:L.48, O:F.58, O:F.58, O:F.110, O:E.148, O:Y.153, O:V.205, O:V.205, O:P.209 Hydrogen bonds: O:N.275 Salt bridges: O:R.100, O:H.104 Metal complexes: O:H.103, O:H.204 HEM.48: 32 residues within 4Å: Chain O: F.28, S.33, F.34, M.35, L.36, G.37, E.38, A.40, L.41, F.110, M.114, H.117, M.118, R.120, I.121, A.126, F.127, R.131, N.134, W.135, G.138, V.139, L.141, I.142, I.216, H.219, L.220, V.223, H.228, T.229, L.357 Ligands: MQ9.49 25 PLIP interactions: 25 interactions with chain O, Hydrophobic interactions: O:F.110, O:M.118, O:I.121, O:I.121, O:I.121, O:A.126, O:N.134, O:W.135, O:L.141, O:I.142, O:I.216, O:V.223, O:V.223 Hydrogen bonds: O:G.37, O:T.229, O:T.229 Salt bridges: O:H.117, O:R.120, O:R.120, O:R.131, O:H.228, O:H.228 pi-Cation interactions: O:H.117 Metal complexes: O:H.117, O:H.219

14 x CDL: CARDIOLIPIN(Non-covalent)

CDL.10: 18 residues within 4Å: Chain B: H.31, W.32, F.123, F.231, R.359, P.360, R.361, T.367, V.371, L.374, T.419, L.422, C.423, L.426, A.476 Chain C: M.277, R.282 Ligands: CDL.14 15 PLIP interactions: 12 interactions with chain B, 3 interactions with chain C Hydrophobic interactions: B:W.32, B:F.123, B:V.371, B:V.371, B:L.374, B:T.419 Hydrogen bonds: B:W.32, B:R.359, B:R.361, C:R.282 Salt bridges: B:H.31, B:R.359, B:R.361, C:R.282, C:R.282 CDL.14: 24 residues within 4Å: Chain B: R.361, I.418, L.422, L.426, K.479, Q.483 Chain C: L.270, A.274, M.277, R.282 Chain D: W.30, M.33 Chain G: I.94, W.95, A.97, A.98, G.101, A.102, L.124, F.127, T.128, K.131 Ligands: CDL.10, CDL.32 11 PLIP interactions: 2 interactions with chain B, 3 interactions with chain C, 6 interactions with chain G Hydrogen bonds: B:R.361, C:R.282 Salt bridges: B:K.479, C:R.282, G:K.131, G:K.131 Hydrophobic interactions: C:L.270, G:W.95, G:L.124, G:F.127, G:F.127 CDL.22: 39 residues within 4Å: Chain D: F.119, P.120, R.121, L.122, F.125, I.181, V.184, A.185, I.188, L.229 Chain F: V.25, G.28, T.29, F.32, Q.35, E.36, H.152, A.155, M.158, A.159, V.162, V.163, R.166, A.179, V.182, V.183, Y.186 Chain G: F.88, S.90, M.99, V.103, L.106, L.122, L.125, I.126, I.129, L.132, N.133 Chain K: A.45 24 PLIP interactions: 9 interactions with chain D, 4 interactions with chain G, 11 interactions with chain F Hydrophobic interactions: D:F.119, D:L.122, D:L.122, D:I.181, D:V.184, G:V.103, G:L.125, G:I.129, F:F.32, F:A.155, F:M.158, F:A.159, F:V.162, F:V.163, F:V.183 Hydrogen bonds: D:F.119, D:R.121, D:R.121, G:N.133, F:T.29, F:A.175 Salt bridges: D:R.121, F:R.166, F:R.166 CDL.23: 36 residues within 4Å: Chain B: F.417, I.418, R.421, L.422 Chain D: T.20, G.21, A.23, R.24, K.25, G.26, S.27, K.28, A.29, M.32, M.33, I.43, M.44, I.46, I.47, M.48, F.50, S.51, F.54, F.127, W.128, V.415, F.419, M.422, T.423, F.492, I.493, V.496, F.497, W.500, R.501 Ligands: HAS.18 24 PLIP interactions: 22 interactions with chain D, 2 interactions with chain B Hydrophobic interactions: D:M.44, D:I.46, D:I.47, D:I.47, D:F.50, D:F.50, D:F.54, D:F.54, D:F.419, D:T.423, D:F.492, D:V.496, D:W.500, D:W.500 Hydrogen bonds: D:T.20, D:G.26, D:G.26, D:K.28, D:A.29, D:W.500, B:R.421 Salt bridges: D:K.28, D:R.501, B:R.421 CDL.31: 16 residues within 4Å: Chain A: W.59, F.112, L.116, K.119, K.120 Chain B: F.495 Chain C: W.278 Chain F: L.106, I.109, V.161, L.164, M.165, H.168, K.169 Chain G: K.142 Ligands: CDL.32 15 PLIP interactions: 8 interactions with chain F, 5 interactions with chain A, 2 interactions with chain C Hydrophobic interactions: F:L.106, F:I.109, F:L.164, F:L.164, A:W.59, A:W.59, A:F.112, A:F.112, C:W.278 Salt bridges: F:H.168, F:H.168, F:K.169, F:K.169, A:K.120 Hydrogen bonds: C:W.278 CDL.32: 24 residues within 4Å: Chain A: L.108, F.112 Chain B: I.260, F.264, L.267 Chain C: V.271, A.274, A.275, M.277, W.278 Chain F: M.158, V.161, V.162, M.165, K.169 Chain G: I.126, F.127, T.130, K.131, L.134, V.138, P.139 Ligands: CDL.14, CDL.31 10 PLIP interactions: 3 interactions with chain B, 3 interactions with chain G, 2 interactions with chain F, 2 interactions with chain A Hydrophobic interactions: B:I.260, B:F.264, B:L.267, G:F.127, G:F.127, A:L.108, A:F.112 Salt bridges: G:K.131, F:K.169, F:K.169 CDL.35: 21 residues within 4Å: Chain B: L.115, M.118, L.119, F.122, W.135, L.336, L.337, Y.340, I.343, F.347, L.369, G.370, A.373, L.374, Y.377 Chain I: W.28, L.31, K.32, T.35, L.38 Ligands: LYC.11 14 PLIP interactions: 6 interactions with chain I, 8 interactions with chain B Hydrophobic interactions: I:W.28, I:L.38, B:L.115, B:F.122, B:L.337, B:Y.340, B:Y.340, B:L.374, B:Y.377, B:Y.377 Hydrogen bonds: I:K.32, I:T.35, I:T.35 Salt bridges: I:K.32 CDL.50: 18 residues within 4Å: Chain O: H.31, W.32, F.123, F.231, R.359, P.360, R.361, T.367, V.371, L.374, T.419, L.422, C.423, L.426, A.476 Chain P: M.277, R.282 Ligands: CDL.52 15 PLIP interactions: 12 interactions with chain O, 3 interactions with chain P Hydrophobic interactions: O:W.32, O:F.123, O:V.371, O:V.371, O:L.374, O:T.419 Hydrogen bonds: O:W.32, O:R.359, O:R.361, P:R.282 Salt bridges: O:H.31, O:R.359, O:R.361, P:R.282, P:R.282 CDL.52: 24 residues within 4Å: Chain O: R.361, I.418, L.422, L.426, K.479, Q.483 Chain P: L.270, A.274, M.277, R.282 Chain Q: W.30, M.33 Chain T: I.94, W.95, A.97, A.98, G.101, A.102, L.124, F.127, T.128, K.131 Ligands: CDL.50, CDL.70 11 PLIP interactions: 6 interactions with chain T, 3 interactions with chain P, 2 interactions with chain O Hydrophobic interactions: T:I.94, T:A.98, T:L.124, T:F.127, P:L.270 Salt bridges: T:K.131, T:K.131, P:R.282, O:K.479 Hydrogen bonds: P:R.282, O:R.361 CDL.59: 39 residues within 4Å: Chain Q: F.119, P.120, R.121, L.122, F.125, I.181, V.184, A.185, I.188, L.229 Chain S: V.25, G.28, T.29, F.32, Q.35, E.36, H.152, A.155, M.158, A.159, V.162, V.163, R.166, A.179, V.182, V.183, Y.186 Chain T: F.88, S.90, M.99, V.103, L.106, L.122, L.125, I.126, I.129, L.132, N.133 Chain X: A.45 25 PLIP interactions: 9 interactions with chain Q, 11 interactions with chain S, 5 interactions with chain T Hydrophobic interactions: Q:F.119, Q:L.122, Q:L.122, Q:I.181, Q:V.184, S:F.32, S:A.155, S:M.158, S:A.159, S:V.162, S:V.163, S:V.183, T:L.122, T:L.125, T:I.129, T:L.132 Hydrogen bonds: Q:F.119, Q:R.121, Q:R.121, S:T.29, S:A.175, T:N.133 Salt bridges: Q:R.121, S:R.166, S:R.166 CDL.60: 36 residues within 4Å: Chain O: F.417, I.418, R.421, L.422 Chain Q: T.20, G.21, A.23, R.24, K.25, G.26, S.27, K.28, A.29, M.32, M.33, I.43, M.44, I.46, I.47, M.48, F.50, S.51, F.54, F.127, W.128, V.415, F.419, M.422, T.423, F.492, I.493, V.496, F.497, W.500, R.501 Ligands: HAS.55 24 PLIP interactions: 22 interactions with chain Q, 2 interactions with chain O Hydrophobic interactions: Q:M.44, Q:I.46, Q:I.47, Q:I.47, Q:F.50, Q:F.50, Q:F.54, Q:F.54, Q:F.419, Q:T.423, Q:F.492, Q:V.496, Q:W.500, Q:W.500 Hydrogen bonds: Q:T.20, Q:G.26, Q:G.26, Q:K.28, Q:A.29, Q:W.500, O:R.421 Salt bridges: Q:K.28, Q:R.501, O:R.421 CDL.69: 16 residues within 4Å: Chain N: W.59, F.112, L.116, K.119, K.120 Chain O: F.495 Chain P: W.278 Chain S: L.106, I.109, V.161, L.164, M.165, H.168, K.169 Chain T: K.142 Ligands: CDL.70 16 PLIP interactions: 8 interactions with chain S, 6 interactions with chain N, 2 interactions with chain P Hydrophobic interactions: S:L.106, S:I.109, S:L.164, S:L.164, N:W.59, N:W.59, N:F.112, N:F.112, N:F.112, P:W.278 Salt bridges: S:H.168, S:H.168, S:K.169, S:K.169, N:K.120 Hydrogen bonds: P:W.278 CDL.70: 24 residues within 4Å: Chain N: L.108, F.112 Chain O: I.260, F.264, L.267 Chain P: V.271, A.274, A.275, M.277, W.278 Chain S: M.158, V.161, V.162, M.165, K.169 Chain T: I.126, F.127, T.130, K.131, L.134, V.138, P.139 Ligands: CDL.52, CDL.69 9 PLIP interactions: 3 interactions with chain O, 1 interactions with chain N, 3 interactions with chain T, 2 interactions with chain S Hydrophobic interactions: O:I.260, O:F.264, O:L.267, N:L.108, T:F.127, T:F.127 Salt bridges: T:K.131, S:K.169, S:K.169 CDL.75: 21 residues within 4Å: Chain O: L.115, M.118, L.119, F.122, W.135, L.336, L.337, Y.340, I.343, F.347, L.369, G.370, A.373, L.374, Y.377 Chain V: W.28, L.31, K.32, T.35, L.38 Ligands: LYC.51 14 PLIP interactions: 6 interactions with chain V, 8 interactions with chain O Hydrophobic interactions: V:W.28, V:L.38, O:L.115, O:F.122, O:L.337, O:Y.340, O:Y.340, O:L.374, O:Y.377, O:Y.377 Hydrogen bonds: V:K.32, V:T.35, V:T.35 Salt bridges: V:K.32

2 x LYC: LYCOPENE(Non-covalent)

LYC.11: 32 residues within 4Å: Chain B: L.115, M.118, V.139, I.142, I.143, M.146, W.300, L.333, V.334, L.336, L.337, L.369, M.372, A.373, F.376, Y.377, L.408, I.409, V.410, P.412, A.413, I.414, F.417 Chain I: I.36, A.39, G.40, S.43, L.71, G.74, L.75, H.78 Ligands: CDL.35 13 PLIP interactions: 10 interactions with chain B, 3 interactions with chain I Hydrophobic interactions: B:I.142, B:I.143, B:W.300, B:W.300, B:L.333, B:V.334, B:L.337, B:A.373, B:Y.377, B:A.413, I:L.71, I:L.75, I:L.75 LYC.51: 32 residues within 4Å: Chain O: L.115, M.118, V.139, I.142, I.143, M.146, W.300, L.333, V.334, L.336, L.337, L.369, M.372, A.373, F.376, Y.377, L.408, I.409, V.410, P.412, A.413, I.414, F.417 Chain V: I.36, A.39, G.40, S.43, L.71, G.74, L.75, H.78 Ligands: CDL.75 13 PLIP interactions: 10 interactions with chain O, 3 interactions with chain V Hydrophobic interactions: O:I.142, O:I.143, O:W.300, O:W.300, O:L.333, O:V.334, O:L.337, O:A.373, O:Y.377, O:A.413, V:L.71, V:L.75, V:L.75

2 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)

LMT.13: 14 residues within 4Å: Chain B: A.4, G.7, N.8, L.10, D.11, M.16, A.17, I.20 Chain N: R.141, R.142, I.144, V.145, L.148 Ligands: 3PE.41 8 PLIP interactions: 5 interactions with chain B, 3 interactions with chain N Hydrophobic interactions: B:D.11, B:I.20, N:I.144, N:L.148 Hydrogen bonds: B:N.8, B:N.8, B:N.8 Salt bridges: N:R.141 LMT.45: 14 residues within 4Å: Chain A: R.141, R.142, I.144, V.145, L.148 Chain O: A.4, G.7, N.8, L.10, D.11, M.16, A.17, I.20 Ligands: 3PE.5 8 PLIP interactions: 5 interactions with chain O, 3 interactions with chain A Hydrophobic interactions: O:D.11, O:I.20, A:I.144, A:L.148 Hydrogen bonds: O:N.8, O:N.8, O:N.8 Salt bridges: A:R.141

4 x HEC: HEME C(Covalent)

HEC.15: 32 residues within 4Å: Chain C: Y.63, A.66, C.67, T.69, C.70, H.71, R.81, G.82, P.83, L.85, V.88, A.92, V.93, Q.96, V.97, M.102, P.103, I.104, L.105, N.107, A.111, Y.118, I.126, V.130, P.215, Q.216 Chain E: W.125, Y.264 Chain H: T.9, Q.12, A.14, A.15 11 PLIP interactions: 1 interactions with chain H, 9 interactions with chain C, 1 interactions with chain E, Hydrogen bonds: H:A.15 Hydrophobic interactions: C:L.85, C:L.85, C:Q.96, C:P.103, C:I.104, C:Y.118, C:I.126, C:I.126, E:W.125 Metal complexes: C:H.71 HEC.16: 36 residues within 4Å: Chain A: M.261, L.342, Y.343, E.344 Chain C: F.95, Q.96, R.101, Q.110, R.113, F.173, N.176, C.177, S.179, C.180, H.181, L.190, Y.195, A.196, P.197, N.198, L.199, A.201, A.202, E.206, I.207, A.210, M.211, P.215, Q.216, N.217, M.218, P.219, F.221, L.226, I.234, I.238 18 PLIP interactions: 18 interactions with chain C, Hydrophobic interactions: C:F.95, C:P.197, C:L.199, C:I.207, C:A.210, C:P.215, C:M.218, C:F.221, C:L.226, C:I.234 Hydrogen bonds: C:Q.110, C:N.198, C:Q.216, C:Q.216 Salt bridges: C:R.101, C:R.101, C:R.113 Metal complexes: C:H.181 HEC.53: 33 residues within 4Å: Chain P: Y.63, A.66, C.67, T.69, C.70, H.71, R.81, G.82, P.83, L.85, V.88, A.92, V.93, Q.96, V.97, M.102, P.103, I.104, L.105, N.107, A.111, Y.118, I.126, V.130, P.215, Q.216 Chain R: W.125, Y.264 Chain U: T.9, S.10, Q.12, A.14, A.15 11 PLIP interactions: 1 interactions with chain U, 9 interactions with chain P, 1 interactions with chain R, Hydrogen bonds: U:A.15 Hydrophobic interactions: P:L.85, P:L.85, P:Q.96, P:P.103, P:I.104, P:Y.118, P:I.126, P:I.126, R:W.125 Metal complexes: P:H.71 HEC.54: 36 residues within 4Å: Chain N: M.261, L.342, Y.343, E.344 Chain P: F.95, Q.96, R.101, Q.110, R.113, F.173, N.176, C.177, S.179, C.180, H.181, L.190, Y.195, A.196, P.197, N.198, L.199, A.201, A.202, E.206, I.207, A.210, M.211, P.215, Q.216, N.217, M.218, P.219, F.221, L.226, I.234, I.238 18 PLIP interactions: 18 interactions with chain P, Hydrophobic interactions: P:F.95, P:P.197, P:L.199, P:I.207, P:A.210, P:P.215, P:M.218, P:F.221, P:L.226, P:I.234 Hydrogen bonds: P:Q.110, P:N.198, P:Q.216, P:Q.216 Salt bridges: P:R.101, P:R.101, P:R.113 Metal complexes: P:H.181

2 x 3PH: 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE(Non-covalent)

3PH.17: 31 residues within 4Å: Chain B: V.112, L.115, V.116, L.119, V.296, L.374, Y.377, I.378, T.381, V.382, G.385, V.388, Y.389, Q.392, F.393 Chain C: Y.250, L.252, G.253, L.255, V.258, A.259, L.262, F.263, W.265, V.266, F.267, I.269 Chain G: H.114, Y.115, W.116, V.120 14 PLIP interactions: 1 interactions with chain B, 7 interactions with chain C, 6 interactions with chain G Hydrophobic interactions: B:F.393, C:V.258, C:A.259, C:F.263, C:F.263, C:F.267, C:F.267, G:W.116, G:W.116 Hydrogen bonds: C:Y.250, G:Y.115, G:W.116, G:W.116 Salt bridges: G:H.114 3PH.71: 30 residues within 4Å: Chain O: V.112, L.115, V.116, L.119, L.374, Y.377, I.378, T.381, V.382, G.385, V.388, Y.389, Q.392, F.393 Chain P: Y.250, L.252, G.253, L.255, V.258, A.259, L.262, F.263, W.265, V.266, F.267, I.269 Chain T: H.114, Y.115, W.116, V.120 13 PLIP interactions: 1 interactions with chain O, 6 interactions with chain T, 6 interactions with chain P Hydrophobic interactions: O:F.393, T:W.116, T:W.116, P:V.258, P:F.263, P:F.263, P:F.267, P:F.267 Hydrogen bonds: T:Y.115, T:W.116, T:W.116, P:Y.250 Salt bridges: T:H.114

4 x HAS: HEME-AS(Non-covalent)

HAS.18: 42 residues within 4Å: Chain D: S.51, F.53, F.54, G.57, L.58, A.60, L.61, I.63, R.64, L.67, F.80, F.84, T.85, H.87, G.88, M.91, L.92, Y.95, G.151, W.152, Y.393, I.396, F.399, H.400, L.403, F.404, V.407, V.408, T.446, F.447, Q.450, R.460, R.461, Y.462, S.482, L.485, G.486, V.489, I.490, I.493 Ligands: HAS.19, CDL.23 27 PLIP interactions: 27 interactions with chain D, Hydrophobic interactions: D:F.53, D:F.53, D:F.54, D:F.54, D:A.60, D:L.61, D:M.91, D:L.92, D:I.396, D:F.399, D:F.399, D:L.403, D:V.408, D:V.489, D:V.489 Hydrogen bonds: D:R.64, D:W.152, D:Y.393, D:Q.450, D:R.461, D:Y.462 Salt bridges: D:R.460, D:R.461 pi-Stacking: D:F.447 pi-Cation interactions: D:H.400 Metal complexes: D:H.87, D:H.400 HAS.19: 46 residues within 4Å: Chain D: L.92, W.152, T.153, W.261, V.268, Y.269, L.271, A.272, H.314, H.315, F.317, T.331, I.334, S.335, T.338, G.339, F.342, F.343, F.370, L.371, G.374, L.375, G.377, I.378, L.380, A.381, D.386, A.390, L.395, H.398, F.399, T.402, L.403, T.406, R.460, R.461 Chain E: V.36, A.39, A.40, I.43, M.47, P.89, I.92, V.93, L.96 Ligands: HAS.18 21 PLIP interactions: 18 interactions with chain D, 3 interactions with chain E, Hydrophobic interactions: D:W.261, D:V.268, D:V.268, D:T.338, D:F.342, D:F.343, D:F.370, D:F.370, D:I.378, D:F.399, D:F.399, D:L.403, D:L.403, E:A.39, E:I.92, E:V.93 Hydrogen bonds: D:W.152, D:H.314, D:D.386 Salt bridges: D:R.460 Metal complexes: D:H.398 HAS.55: 42 residues within 4Å: Chain Q: S.51, F.53, F.54, G.57, L.58, A.60, L.61, I.63, R.64, L.67, F.80, F.84, T.85, H.87, G.88, M.91, L.92, Y.95, G.151, W.152, Y.393, I.396, F.399, H.400, L.403, F.404, V.407, V.408, T.446, F.447, Q.450, R.460, R.461, Y.462, S.482, L.485, G.486, V.489, I.490, I.493 Ligands: HAS.56, CDL.60 26 PLIP interactions: 26 interactions with chain Q, Hydrophobic interactions: Q:F.53, Q:F.53, Q:F.54, Q:F.54, Q:A.60, Q:L.61, Q:M.91, Q:L.92, Q:I.396, Q:F.399, Q:F.399, Q:L.403, Q:V.408, Q:V.489, Q:V.489 Hydrogen bonds: Q:R.64, Q:W.152, Q:Y.393, Q:Q.450, Q:R.461, Q:Y.462 Salt bridges: Q:R.460, Q:R.461 pi-Stacking: Q:F.447 Metal complexes: Q:H.87, Q:H.400 HAS.56: 46 residues within 4Å: Chain Q: L.92, W.152, T.153, W.261, V.268, Y.269, L.271, A.272, H.314, H.315, F.317, T.331, I.334, S.335, T.338, G.339, F.342, F.343, F.370, L.371, G.374, L.375, G.377, I.378, L.380, A.381, D.386, A.390, L.395, H.398, F.399, T.402, L.403, T.406, R.460, R.461 Chain R: V.36, A.39, A.40, I.43, M.47, P.89, I.92, V.93, L.96 Ligands: HAS.55 21 PLIP interactions: 18 interactions with chain Q, 3 interactions with chain R, Hydrophobic interactions: Q:W.261, Q:V.268, Q:V.268, Q:T.338, Q:F.342, Q:F.343, Q:F.370, Q:F.370, Q:I.378, Q:F.399, Q:F.399, Q:L.403, Q:L.403, R:A.39, R:I.92, R:V.93 Hydrogen bonds: Q:W.152, Q:H.314, Q:D.386 Salt bridges: Q:R.460 Metal complexes: Q:H.398

2 x CU: COPPER (II) ION(Non-covalent)

CU.20: 4 residues within 4Å: Chain D: H.265, V.268, H.314, H.315 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:H.265, D:H.314, D:H.315 CU.57: 4 residues within 4Å: Chain Q: H.265, V.268, H.314, H.315 3 PLIP interactions: 3 interactions with chain Q Metal complexes: Q:H.265, Q:H.314, Q:H.315

2 x CA: CALCIUM ION(Non-covalent)

CA.21: 7 residues within 4Å: Chain D: E.66, L.67, T.69, P.70, G.71, L.72, Q.73 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:E.66, D:E.66, D:T.69, D:G.71 CA.58: 7 residues within 4Å: Chain Q: E.66, L.67, T.69, P.70, G.71, L.72, Q.73 4 PLIP interactions: 4 interactions with chain Q Metal complexes: Q:E.66, Q:E.66, Q:T.69, Q:G.71

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.25: 6 residues within 4Å: Chain D: V.318, T.319, D.391 Chain E: D.228, Y.230, E.259 4 PLIP interactions: 2 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:D.228, E:D.228, H2O.1, H2O.1 MN.62: 6 residues within 4Å: Chain Q: V.318, T.319, D.391 Chain R: D.228, Y.230, E.259 4 PLIP interactions: 2 interactions with chain R, 2 Ligand-Water interactions Metal complexes: R:D.228, R:D.228, H2O.1, H2O.1

4 x CUA: DINUCLEAR COPPER ION(Covalent)(Non-covalent)

CUA.26: 6 residues within 4Å: Chain E: W.125, H.216, C.257, C.261, M.268 Ligands: CUA.27 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:H.216, E:C.257, E:C.261 CUA.27: 6 residues within 4Å: Chain E: C.257, E.259, M.260, C.261, H.265 Ligands: CUA.26 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.257, E:E.259, E:C.261, E:H.265 CUA.63: 6 residues within 4Å: Chain R: W.125, H.216, C.257, C.261, M.268 Ligands: CUA.64 3 PLIP interactions: 3 interactions with chain R Metal complexes: R:H.216, R:C.257, R:C.261 CUA.64: 6 residues within 4Å: Chain R: C.257, E.259, M.260, C.261, H.265 Ligands: CUA.63 4 PLIP interactions: 4 interactions with chain R Metal complexes: R:C.257, R:E.259, R:C.261, R:H.265

6 x DGA: DIACYL GLYCEROL(Covalent)

DGA.28: 12 residues within 4Å: Chain E: C.1, V.3, N.31, F.32, W.35, V.36, V.38, A.39, I.92, V.95, L.96, F.99 7 PLIP interactions: 7 interactions with chain E Hydrophobic interactions: E:V.3, E:W.35, E:W.35, E:W.35, E:V.36, E:V.95, E:L.96 DGA.33: 9 residues within 4Å: Chain D: F.141 Chain H: C.1 Chain I: V.59, I.62, W.63, V.66 Ligands: 9YF.12, PLM.34, IX7.36 4 PLIP interactions: 4 interactions with chain I Hydrophobic interactions: I:V.59, I:I.62, I:W.63, I:V.66 DGA.38: 10 residues within 4Å: Chain B: M.308, W.311, L.313, W.325, V.328, M.329 Chain I: F.46, G.49, F.52 Chain M: C.1 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain I Hydrophobic interactions: B:W.311, B:W.311, B:W.325, B:W.325, B:W.325, I:F.46 Hydrogen bonds: B:W.325 DGA.65: 12 residues within 4Å: Chain R: C.1, V.3, N.31, F.32, W.35, V.36, V.38, A.39, I.92, V.95, L.96, F.99 7 PLIP interactions: 7 interactions with chain R Hydrophobic interactions: R:V.3, R:W.35, R:W.35, R:W.35, R:V.36, R:V.95, R:L.96 DGA.72: 9 residues within 4Å: Chain Q: F.141 Chain U: C.1 Chain V: V.59, I.62, W.63, V.66 Ligands: IX7.67, PLM.73, 9YF.74 4 PLIP interactions: 4 interactions with chain V Hydrophobic interactions: V:V.59, V:I.62, V:W.63, V:V.66 DGA.77: 10 residues within 4Å: Chain O: M.308, W.311, L.313, W.325, V.328, M.329 Chain V: F.46, G.49, F.52 Chain Z: C.1 6 PLIP interactions: 1 interactions with chain V, 5 interactions with chain O Hydrophobic interactions: V:F.46, O:W.311, O:W.325, O:W.325, O:W.325 Hydrogen bonds: O:W.325

4 x PLM: PALMITIC ACID(Covalent)

PLM.34: 19 residues within 4Å: Chain D: L.55, M.59, L.62, Q.79, Q.82, L.83, V.135, L.138, T.139, F.141, L.142, P.144, G.145, G.146 Chain H: C.1, S.2, A.3 Ligands: DGA.33, IX7.36 8 PLIP interactions: 6 interactions with chain D, 2 interactions with chain H Hydrophobic interactions: D:L.55, D:L.138, D:F.141, D:F.141, D:F.141, D:L.142 Hydrogen bonds: H:S.2, H:A.3 PLM.39: 6 residues within 4Å: Chain B: E.312, L.313, Y.314, L.315 Chain M: C.1, S.2 No protein-ligand interaction detected (PLIP) PLM.73: 19 residues within 4Å: Chain Q: L.55, M.59, L.62, Q.79, Q.82, L.83, V.135, L.138, T.139, F.141, L.142, P.144, G.145, G.146 Chain U: C.1, S.2, A.3 Ligands: IX7.67, DGA.72 8 PLIP interactions: 6 interactions with chain Q, 2 interactions with chain U Hydrophobic interactions: Q:L.83, Q:L.138, Q:F.141, Q:F.141, Q:F.141, Q:L.142 Hydrogen bonds: U:S.2, U:A.3 PLM.78: 6 residues within 4Å: Chain O: E.312, L.313, Y.314, L.315 Chain Z: C.1, S.2 No protein-ligand interaction detected (PLIP)

2 x IX7: [(2~{R})-3-[[(1~{S},2~{R},3~{R},4~{S},5~{S},6~{R})-2-[(2~{R},3~{S},4~{S},5~{S},6~{R})-6-(hexadecanoyloxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-6-[(2~{R},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3,4,5-tris(oxidanyl)cyclohexyl]oxy-oxidanyl-phosphoryl]oxy-2-undecanoyloxy-propyl] (10~{S})-10-methylhenicosanoate(Non-covalent)

IX7.36: 18 residues within 4Å: Chain D: L.58, L.62, F.74, L.75, Q.79 Chain E: R.322 Chain H: C.1, G.4, Q.5, I.6 Chain I: G.57, H.58, V.59, I.62, V.66 Ligands: 9YF.12, DGA.33, PLM.34 14 PLIP interactions: 4 interactions with chain D, 5 interactions with chain I, 2 interactions with chain H, 3 interactions with chain E Hydrophobic interactions: D:L.58, D:L.62, D:L.75, I:I.62, I:I.62 Hydrogen bonds: D:F.74, I:H.58, I:V.59, H:Q.5, H:I.6, E:R.322, E:R.322 Salt bridges: I:H.58, E:R.322 IX7.67: 18 residues within 4Å: Chain Q: L.58, L.62, F.74, L.75, Q.79 Chain R: R.322 Chain U: C.1, G.4, Q.5, I.6 Chain V: G.57, H.58, V.59, I.62, V.66 Ligands: DGA.72, PLM.73, 9YF.74 16 PLIP interactions: 5 interactions with chain Q, 6 interactions with chain V, 2 interactions with chain U, 3 interactions with chain R Hydrophobic interactions: Q:L.58, Q:L.62, Q:F.74, Q:L.75, V:I.62, V:I.62, V:I.62 Hydrogen bonds: Q:F.74, V:H.58, V:V.59, U:Q.5, U:I.6, R:R.322, R:R.322 Salt bridges: V:H.58, R:R.322

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kao, W.-C. et al., Structural basis for safe and efficient energy conversion in a respiratory supercomplex. Nature Communications (2022)

Release Date

2022-05-18

Peptides

Cytochrome bc1 complex Rieske iron-sulfur subunit: AN
Cytochrome bc1 complex cytochrome b subunit: BO
Cytochrome bc1 complex cytochrome c subunit: CP
Cytochrome c oxidase subunit 1: DQ
Cytochrome c oxidase subunit 2: ER
Cytochrome c oxidase subunit 3: FS
Cytochrome c oxidase polypeptide 4: GT
Uncharacterized protein Cgl2664/cg2949: HU
Uncharacterized membrane protein Cgl2017/cg2211: IV
Hypothetical membrane protein: JW
Actinobacterial supercomplex, subunit C (AscC): KX
Hypothetical membrane protein: LY
Thiamine biosynthesis protein X: MZ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

N
N

B
B

O
O

C
C

P
P

D
D

Q
Q

E
E

R
R

F
F

S
S

G
G

T
T

H
H

U
U

I
I

V
V

J
J

W
W

K
K

X
X

L
L

Y
Y

M
M

Z
Z

Membrane

We predict this structure to be a membrane protein.
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Cytochrome bc1 complex Rieske iron-sulfur subunit

Cytochrome bc1 complex cytochrome b subunit

Cytochrome bc1 complex cytochrome c subunit

Cytochrome c oxidase subunit 1

Cytochrome c oxidase subunit 2

Cytochrome c oxidase subunit 3

Cytochrome c oxidase polypeptide 4

Uncharacterized protein Cgl2664/cg2949

Uncharacterized membrane protein Cgl2017/cg2211

Hypothetical membrane protein

Actinobacterial supercomplex, subunit C (AscC)

Hypothetical membrane protein

Thiamine biosynthesis protein X

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