SMTL ID : 7qhz.1

Crystal structure of KLK6 in complex with compound DKFZ917

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x CI5: (5~{R})-3-(4-carbamimidoylphenyl)-~{N}-[(1~{S})-1-naphthalen-1-ylpropyl]-2-oxidanylidene-1,3-oxazolidine-5-carboxamide(Non-covalent)

CI5.1: 18 residues within 4Å: Chain A: L.24, L.25, C.26, H.41, F.130, D.170, S.171, C.172, Q.173, G.174, S.176, S.191, W.192, G.193, N.194, I.195, C.197, G.204 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.25, A:F.130, A:F.130, A:Q.173 Hydrogen bonds: A:D.170, A:S.171, A:Q.173, A:G.174, A:S.176, A:N.194 Water bridges: A:S.176, A:N.194, A:V.205

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: A.80, H.82, Q.154, W.192 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baumann, A. et al., Scalable synthesis and structural characterization of reversible KLK6 inhibitors. Rsc Adv (2022)

Release Date

2022-11-23

Peptides

Kallikrein-6: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Kallikrein-6

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