SMTL ID : 7qjk.2 (3 other biounits)

Crystal structure of PDE6D in complex with Compound-2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

monomer

Ligands

2 x 9VO: N-(phenylmethyl)pyridin-2-amine(Non-covalent)

9VO.1: 10 residues within 4Å: Chain A: L.18, M.21, L.23, L.39, A.48, V.50, L.64, Q.79, I.130, T.132 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.18, A:L.23, A:L.39, A:A.48, A:V.50, A:L.64 9VO.2: 6 residues within 4Å: Chain A: Q.79, V.81, E.89, W.91, M.118, Y.150 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.81, A:V.81 Hydrogen bonds: A:E.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yelland, T. et al., Stabilization of the RAS:PDE6D Complex Is a Novel Strategy to Inhibit RAS Signaling. J.Med.Chem. (2022)

Release Date

2022-01-26

Peptides

Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta

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