- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.78 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 8 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.2: 9 residues within 4Å:- Chain A: G.117, R.120, T.121, L.166, W.170, L.452, Y.453, A.454
- Ligands: P4C.6
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:T.121, A:W.170
PEG.5: 8 residues within 4Å:- Chain A: I.132, G.134, R.148, H.149
- Chain C: T.136, I.137, P.138, C.145
5 PLIP interactions:3 interactions with chain C, 2 interactions with chain A- Hydrogen bonds: C:I.137, C:C.145, A:H.149, A:H.149
- Water bridges: C:C.145
PEG.9: 8 residues within 4Å:- Chain B: G.117, R.120, T.121, L.166, W.170, L.452, A.454, L.470
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:T.121, B:W.170
PEG.10: 5 residues within 4Å:- Chain A: K.135, A.476
- Chain B: Y.473, A.476
- Ligands: GOL.7
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.135
PEG.14: 9 residues within 4Å:- Chain C: G.117, R.120, T.121, L.166, W.170, L.452, Y.453, A.454
- Ligands: P4C.18
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:W.170
PEG.17: 8 residues within 4Å:- Chain A: T.136, I.137, P.138, C.145
- Chain C: I.132, G.134, R.148, H.149
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain C- Hydrogen bonds: A:I.137, A:C.145, C:H.149, C:H.149
- Water bridges: A:C.145
PEG.21: 8 residues within 4Å:- Chain D: G.117, R.120, T.121, L.166, W.170, L.452, A.454, L.470
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:W.170
PEG.22: 5 residues within 4Å:- Chain C: K.135, A.476
- Chain D: Y.473, A.476
- Ligands: GOL.19
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:K.135
- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 6 residues within 4Å:- Chain A: K.247, R.257, V.258
- Chain B: K.247, V.258, N.466
7 PLIP interactions:2 interactions with chain B, 5 interactions with chain A- Hydrogen bonds: B:K.247, B:V.258, A:K.247, A:V.258, A:V.258
- Water bridges: A:T.259, A:T.259
GOL.4: 3 residues within 4Å:- Chain A: K.320, C.362, G.363
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:G.363
- Water bridges: A:E.361
GOL.7: 6 residues within 4Å:- Chain A: E.472, Y.473, A.476
- Chain B: K.135, H.149
- Ligands: PEG.10
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:K.135, B:K.135
GOL.15: 6 residues within 4Å:- Chain C: K.247, R.257, V.258
- Chain D: K.247, V.258, N.466
7 PLIP interactions:2 interactions with chain D, 5 interactions with chain C- Hydrogen bonds: D:K.247, D:V.258, C:K.247, C:V.258, C:V.258
- Water bridges: C:T.259, C:E.477
GOL.16: 3 residues within 4Å:- Chain C: K.320, C.362, G.363
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:G.363
- Water bridges: C:E.361
GOL.19: 6 residues within 4Å:- Chain C: E.472, Y.473, A.476
- Chain D: K.135, H.149
- Ligands: PEG.22
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:K.135, D:K.135
- 4 x P4C: O-ACETALDEHYDYL-HEXAETHYLENE GLYCOL(Covalent)
P4C.6: 12 residues within 4Å:- Chain A: I.113, N.162, F.163, L.166, M.167, W.170, F.289, C.294, C.295, N.450, L.452
- Ligands: PEG.2
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.162, A:C.295, A:L.452
P4C.12: 12 residues within 4Å:- Chain B: I.113, N.162, F.163, L.166, M.167, W.170, F.289, C.294, C.295, T.296, N.450, L.452
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.162, B:C.295
- Water bridges: B:N.450
P4C.18: 12 residues within 4Å:- Chain C: I.113, N.162, F.163, L.166, M.167, W.170, F.289, C.294, C.295, N.450, L.452
- Ligands: PEG.14
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:N.162, C:C.295, C:L.452
P4C.24: 12 residues within 4Å:- Chain D: I.113, N.162, F.163, L.166, M.167, W.170, F.289, C.294, C.295, T.296, N.450, L.452
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:N.162, D:C.295
- Water bridges: D:N.450
- 2 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Castellvi, A. et al., Structural and biochemical evidence that ATP inhibits the cancer biomarker human aldehyde dehydrogenase 1A3. Commun Biol (2022)
- Release Date
- 2022-04-20
- Peptides
- Aldehyde dehydrogenase family 1 member A3: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.78 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 8 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- 4 x P4C: O-ACETALDEHYDYL-HEXAETHYLENE GLYCOL(Covalent)
- 2 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Castellvi, A. et al., Structural and biochemical evidence that ATP inhibits the cancer biomarker human aldehyde dehydrogenase 1A3. Commun Biol (2022)
- Release Date
- 2022-04-20
- Peptides
- Aldehyde dehydrogenase family 1 member A3: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B