SMTL ID : 7qke.1

Crystal structure of CYP125 from Mycobacterium tuberculosis in complex with inhibitor (surface entropy reduction mutant)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x E1V: ethyl 1-(cyclohexylmethyl)-5-pyridin-4-yl-indole-2-carboxylate(Non-covalent)

E1V.1: 23 residues within 4Å: Chain A: I.82, F.85, I.89, D.93, I.94, V.96, Q.97, F.99, V.100, L.102, M.185, T.186, P.198, K.199, S.202, I.206, F.245, V.248, M.249, V.252, A.253, F.301, W.399 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.85, A:V.96, A:Q.97, A:L.102, A:T.186, A:F.245, A:V.248, A:V.252, A:V.252, A:W.399

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.2: 34 residues within 4Å: Chain A: S.68, M.101, L.102, H.109, R.113, F.120, I.164, L.167, M.249, L.250, A.253, G.254, T.257, T.258, S.261, V.292, P.297, V.298, F.301, R.303, Y.326, G.353, F.354, G.355, G.356, A.359, H.360, Y.361, C.362, I.363, G.364, L.367, A.368, I.372 20 PLIP interactions: 19 interactions with chain A, 1 Ligand-Water interactions, Hydrophobic interactions: A:F.120, A:L.250, A:A.253, A:P.297, A:F.301, A:Y.326, A:F.354, A:I.363, A:L.367 Hydrogen bonds: A:G.356 Water bridges: A:Y.326, A:G.356, A:H.360 Salt bridges: A:H.109, A:R.113, A:R.303, A:H.360 pi-Stacking: A:F.354 Metal complexes: A:C.362, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Katariya, M.M. et al., Structure Based Discovery of Inhibitors of CYP125 and CYP142 from Mycobacterium tuberculosis. Chemistry (2023)

Release Date

2022-12-28

Peptides

Steroid C26-monooxygenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Steroid C26-monooxygenase

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