SMTL ID : 7qnn.1

Crystal structure of CYP125 from Mycobacterium tuberculosis in complex with inhibitor (surface entropy reduction mutant)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.47 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 27 residues within 4Å: Chain A: M.101, L.102, H.109, R.113, F.120, M.249, L.250, A.253, G.254, T.257, T.258, P.297, F.301, R.303, Y.326, G.353, F.354, G.355, G.356, A.359, H.360, Y.361, C.362, I.363, G.364, L.367, A.368 21 PLIP interactions: 21 interactions with chain A, Hydrophobic interactions: A:F.120, A:L.250, A:A.253, A:T.258, A:P.297, A:F.301, A:Y.326, A:F.354, A:I.363, A:L.367 Hydrogen bonds: A:G.356 Water bridges: A:R.303, A:R.303, A:Y.326, A:H.360 Salt bridges: A:H.109, A:R.113, A:R.303, A:H.360 pi-Stacking: A:F.354 Metal complexes: A:C.362

1 x E93: ethyl 1-(cyclopentylmethyl)-5-pyridin-4-yl-indole-2-carboxylate(Non-covalent)

E93.2: 11 residues within 4Å: Chain A: I.82, D.93, V.96, L.102, S.202, I.206, V.248, V.252, A.253, F.301, W.399 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.82, A:L.102, A:I.206, A:V.248, A:V.252, A:V.252, A:W.399 Hydrogen bonds: A:S.202

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Katariya, M.M. et al., Structure Based Discovery of Inhibitors of CYP125 and CYP142 from Mycobacterium tuberculosis. Chemistry (2023)

Release Date

2022-12-28

Peptides

Steroid C26-monooxygenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Steroid C26-monooxygenase

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