SMTL ID : 7qp3.1

Pseudogymnoascus pannorum M36 protease without the propeptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.1: 11 residues within 4Å: Chain A: N.146, N.147, A.148, W.166, E.168, V.181, H.184, E.185, I.249, R.250, H.275 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.147, A:E.185 Salt bridges: A:H.184, A:R.250

1 x A2G: 2-acetamido-2-deoxy-alpha-D-galactopyranose(Post Translational Modification)

A2G.2: 2 residues within 4Å: Chain A: K.27, T.28 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.26, A:K.27

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 3 residues within 4Å: Chain A: H.184, H.188, E.214 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.184, A:H.188, A:E.214, H2O.8, H2O.10

5 x CA: CALCIUM ION(Non-covalent)

CA.4: 7 residues within 4Å: Chain A: N.55, D.57, D.59, S.61, W.62, N.64, D.65 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.57, A:D.57, A:D.59, A:S.61, A:D.65 CA.5: 10 residues within 4Å: Chain A: N.119, F.120, E.121, N.124, K.130, G.131, D.133, D.155, G.156, R.193 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:N.119, A:K.130, A:D.133, H2O.4, H2O.5 CA.6: 6 residues within 4Å: Chain A: E.31, N.48, H.109, E.115, E.121, N.124 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.115, A:E.121, H2O.1, H2O.1, H2O.3 CA.7: 9 residues within 4Å: Chain A: N.192, R.193, L.194, T.195, G.196, G.197, P.198, N.200, T.201 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.192, A:R.193, A:T.195, A:G.197, A:N.200 CA.8: 4 residues within 4Å: Chain A: S.299, A.301, D.313, F.316 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.313, H2O.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wilkens, C. et al., Phaeosphaeria nodorum M36 protease without the propeptide. To Be Published

Release Date

2023-01-18

Peptides

Extracellular metalloproteinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Extracellular metalloproteinase