SMTL ID : 7qp4.1

Complex of a Gemini-cholesterol analogue with Retinoid-related Orphan Receptor gamma

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-2-1-mer

Ligands

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 6 residues within 4Å: Chain A: L.28, H.64, F.118, F.119, E.120, G.121 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.118 Hydrogen bonds: A:E.120 Water bridges: A:Q.27 Salt bridges: A:H.64 ACT.2: 4 residues within 4Å: Chain A: E.12, Q.16, H.194, K.197 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.16 Salt bridges: A:H.194 ACT.4: 5 residues within 4Å: Chain B: H.64, F.118, F.119, E.120 Ligands: ECK.6 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:E.120 Water bridges: B:Q.27, B:H.64, B:G.121 Salt bridges: B:H.64 ACT.5: 6 residues within 4Å: Chain B: S.147, L.148, K.206, L.207, P.208, K.212 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:K.212

2 x ECK: (3~{S},8~{S},9~{S},10~{R},13~{R},14~{S},17~{R})-17-[(6~{R})-2,10-dimethyl-2-oxidanyl-undecan-6-yl]-10,13-dimethyl-2,3,4,7,8,9,11,12,14,15,16,17-dodecahydro-1~{H}-cyclopenta[a]phenanthren-3-ol(Non-covalent)

ECK.3: 15 residues within 4Å: Chain A: Q.27, L.28, C.61, H.64, M.99, V.102, L.103, R.105, M.106, L.132, C.134, I.141, C.217, H.220, L.224 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.28, A:H.64, A:V.102, A:L.103, A:R.105, A:M.106, A:L.132, A:L.224 Hydrogen bonds: A:Q.27 Water bridges: A:R.105, A:R.105 ECK.6: 17 residues within 4Å: Chain B: Q.27, L.28, W.58, C.61, H.64, M.99, V.102, R.105, M.106, A.109, F.119, L.132, I.141, C.217, H.220, R.223 Ligands: ACT.4 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:L.28, B:V.102, B:M.106, B:A.109, B:F.119, B:L.132, B:I.141 Hydrogen bonds: B:Q.27, B:H.220 Water bridges: B:R.105, B:R.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gomez-Bouzo, U. et al., Development of novel Gemini-cholesterol analogues for retinoid-related orphan receptors. Org Chem Front (2022)

Release Date

2022-12-14

Peptides

Nuclear receptor ROR-gamma: AB
HIS-VAL-GLU-ARG-LEU-GLN-ILE-PHE-GLN-HIS-LEU-HIS-PRO-ILE-VAL: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
P

Nuclear receptor ROR-gamma

HIS-VAL-GLU-ARG-LEU-GLN-ILE-PHE-GLN-HIS-LEU-HIS-PRO-ILE-VAL