SMTL ID : 7qpn.2 (1 other biounit)

Crystal Structure of Phosphatidylinositol 5-Phosphate 4-Kinase (PI5P4K2C) bound to an allosteric inhibitor and AMP-PNP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 10 residues within 4Å: Chain A: K.46, K.50, K.70, Y.72, S.125, I.128, A.129, H.132, R.159, Y.168 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:K.46, A:K.50, A:K.50, A:K.50, A:K.70, A:S.125, A:R.159, A:R.159 Salt bridges: A:K.70, A:R.159 pi-Stacking: A:H.132, A:H.132

1 x DVF: 5-methyl-2-(2-propan-2-ylphenyl)-~{N}-(pyridin-2-ylmethyl)pyrrolo[3,2-d]pyrimidin-4-amine(Non-covalent)

DVF.2: 14 residues within 4Å: Chain A: D.130, M.131, N.134, Y.138, P.152, F.154, F.241, L.242, I.247, L.299, I.300, D.301, L.303, T.304 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:D.130, A:N.134, A:Y.138, A:Y.138, A:F.154, A:F.241, A:I.247 Hydrogen bonds: A:D.301, A:D.301

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Boffey, H.K. et al., Development of Selective Phosphatidylinositol 5-Phosphate 4-Kinase gamma Inhibitors with a Non-ATP-competitive, Allosteric Binding Mode. J.Med.Chem. (2022)

Release Date

2022-05-18

Peptides

Phosphatidylinositol 5-Phosphate 4-Kinase (PI5P4K2C): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Phosphatidylinositol 5-Phosphate 4-Kinase (PI5P4K2C)

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