SMTL ID : 7qqb.1

Crystal structure of the envelope glycoprotein complex of Puumala virus in complex with the scFv fragment of the broadly neutralizing human antibody ADI-42898

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-2-2-mer

Ligands

1 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN.1: 10 residues within 4Å: Chain A: F.268, P.270, N.340 Chain B: Y.502, T.508, G.510, C.511, F.512, M.642, K.643 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.502, B:Y.502

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 7 residues within 4Å: Chain A: P.36, N.125, T.127, T.128, S.310, G.311, P.313 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:P.36 NAG-NAG.3: 3 residues within 4Å: Chain B: S.685, N.687, D.704 No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 6 residues within 4Å: Chain A: R.265, A.269, G.272, E.273, G.355, F.356 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.265, A:G.272, A:E.273, A:E.273, A:F.356

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mittler, E. et al., Structural and mechanistic basis of neutralization by a pan-hantavirus protective antibody. Sci Transl Med (2023)

Release Date

2023-06-21

Peptides

Envelope polyprotein: AB
Single Chain Variable Fragment (scFv) of ADI-42898: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
H

D
L

Envelope polyprotein

Single Chain Variable Fragment (scFv) of ADI-42898