SMTL ID : 7qqm.1

The PDZ domain of LRRC7 fused with ANXA2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain A: G.125, V.126, E.128 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:G.125, A:V.126, A:E.128, H2O.8, H2O.10 CA.2: 3 residues within 4Å: Chain A: K.163, L.166, E.171 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:K.163, A:E.171, H2O.5, H2O.14, H2O.15 CA.3: 4 residues within 4Å: Chain A: G.277, R.280, G.282, E.322 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:G.277, A:G.282, A:E.322, H2O.12, H2O.14 CA.4: 4 residues within 4Å: Chain A: M.353, G.355, G.357, D.397 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:M.353, A:G.355, A:G.357, A:D.397, A:D.397

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 7 residues within 4Å: Chain A: L.16, F.18, V.76, L.79, R.379, G.412, D.413 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:V.76, A:R.379, A:R.379, A:D.413, A:D.413 Water bridges: A:L.16, A:D.414 GOL.6: 7 residues within 4Å: Chain A: C.208, S.209, R.210, R.254, V.297, C.337, K.341 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:C.208, A:R.254 Water bridges: A:N.212, A:N.212 GOL.7: 7 residues within 4Å: Chain A: P.181, D.185, R.210, E.214, S.369, R.370, V.373 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.369, A:R.370, A:R.370

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cousido-Siah, A. et al., A scalable strategy to solve structures of PDZ domains and their complexes. Acta Crystallogr D Struct Biol (2022)

Release Date

2022-04-20

Peptides

Leucine-rich repeat-containing protein 7,Annexin A2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Leucine-rich repeat-containing protein 7,Annexin A2