SMTL ID : 7qr3.1

Chimpanzee CPEB3 HDV-like ribozyme

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.18 Å

Oligo State

homo-dimer

Ligands

3 x K: POTASSIUM ION(Non-covalent)

K.1: 2 residues within 4Å: Chain A: R.46, G.47 No protein-ligand interaction detected (PLIP) K.2: 6 residues within 4Å: Chain B: V.39, S.40, M.45, R.46, G.47, Q.48 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:S.40, B:Q.48 K.4: 3 residues within 4Å: Chain B: E.13, K.74 Chain C: U.46 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.13, H2O.2

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: P.70, F.71, Y.72, D.73 Chain C: U.57, G.58 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.72, A:D.73

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Przytula-Mally, A.I. et al., Anticodon-like loop-mediated dimerization in the crystal structures of HdV-like CPEB3 ribozymes. Biorxiv (2022)

Release Date

2022-10-26

Peptides

U1 small nuclear ribonucleoprotein A: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

U1 small nuclear ribonucleoprotein A

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