SMTL ID : 7qrg.1

Structure of the post-fusion complex between precursor membrane ectodomain (prM) and envelope ectodomain protein (E) from tick-borne encephalitis virus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-3-3-mer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: D.197, Q.200, T.201, Q.218, V.219, H.220, P.276 Chain C: D.137 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:T.201, C:D.137 GOL.2: 5 residues within 4Å: Chain A: C.7, G.32, C.34, W.48, E.148 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.148 GOL.3: 8 residues within 4Å: Chain C: D.197, Q.200, T.201, Q.218, V.219, H.220, P.276 Chain E: D.137 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain C Hydrogen bonds: E:D.137, C:T.201 GOL.4: 5 residues within 4Å: Chain C: C.7, G.32, C.34, W.48, E.148 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:E.148 GOL.5: 8 residues within 4Å: Chain A: D.137 Chain E: D.197, Q.200, T.201, Q.218, V.219, H.220, P.276 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain A Hydrogen bonds: E:T.201, A:D.137 GOL.6: 5 residues within 4Å: Chain E: C.7, G.32, C.34, W.48, E.148 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:E.148

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vaney, M.C. et al., Evolution and activation mechanism of the flavivirus class II membrane-fusion machinery. Nat Commun (2022)

Release Date

2022-05-25

Peptides

Envelope protein E: ACE
Genome polyprotein: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

B
D

D
D

F
D

Envelope protein E

Genome polyprotein

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