SMTL ID : 7qrv.1 (3 other biounits)

Crystal structure of NHL domain of TRIM2 (full C-terminal)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: K.36, V.78, G.82, I.84, S.99 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.82 Water bridges: A:N.34, A:S.99, A:S.99 EDO.2: 4 residues within 4Å: Chain A: F.11, D.53, G.54, Q.55 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.55 Water bridges: A:Q.55 EDO.3: 6 residues within 4Å: Chain A: T.24, N.25, S.269, G.270, H.272 Ligands: EDO.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.25 Water bridges: A:N.25, A:L.26, A:G.270 EDO.4: 4 residues within 4Å: Chain A: W.225, Y.251, G.270 Ligands: EDO.3 No protein-ligand interaction detected (PLIP) EDO.5: 6 residues within 4Å: Chain A: K.116, H.163, F.178, W.225, Q.254 Ligands: EDO.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.116, A:H.163, A:Q.254 EDO.6: 6 residues within 4Å: Chain A: A.31, S.32, T.33, L.258, T.259, S.260 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.31 EDO.7: 5 residues within 4Å: Chain A: N.25, Q.27, K.116, Q.254 Ligands: EDO.5 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.25, A:N.25, A:Q.27, A:K.116, A:Q.254 Water bridges: A:K.116 EDO.8: 1 residues within 4Å: Chain A: E.191 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.191, A:F.192 EDO.9: 5 residues within 4Å: Chain A: W.225, G.226, S.228, Y.251, G.252 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.228, A:G.252

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chaikuad, A. et al., Comparative structural analyses of the NHL domains from the human E3 ligase TRIM-NHL family. Iucrj (2022)

Release Date

2022-05-04

Peptides

Tripartite motif-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tripartite motif-containing protein 2

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