SMTL ID : 7qrx.1 (1 other biounit)

Crystal structure of NHL domain of TRIM71

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: D.12, N.38, R.40 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.40 Water bridges: A:R.40 EDO.2: 5 residues within 4Å: Chain A: K.83, Y.113, W.115, R.131 Ligands: EDO.9 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.83, A:K.83 Water bridges: A:T.130 EDO.3: 6 residues within 4Å: Chain A: T.130, R.131, H.133, D.159, S.160, N.178 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.130, A:R.131, A:N.178 Water bridges: A:T.130 EDO.4: 7 residues within 4Å: Chain A: S.24, A.71, C.72, V.117, A.118, V.119 Ligands: EDO.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:C.72, A:C.72 Water bridges: A:V.164 EDO.5: 6 residues within 4Å: Chain A: S.24, V.25, A.212, A.259, I.260 Ligands: EDO.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.24, A:V.25, A:I.260 EDO.6: 4 residues within 4Å: Chain A: E.28, Y.30, R.76, F.93 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.28, A:Y.30, A:R.76, A:R.76 EDO.7: 6 residues within 4Å: Chain A: Q.245, G.246, S.247, D.253, G.272, N.273 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.246, A:D.253, A:N.273 EDO.8: 3 residues within 4Å: Chain A: R.254, F.271 Ligands: EDO.10 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.19, A:R.254 EDO.9: 6 residues within 4Å: Chain A: R.19, R.36, R.66, K.83, W.115 Ligands: EDO.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.19, A:R.36, A:R.66, A:K.83 EDO.10: 8 residues within 4Å: Chain A: W.21, R.36, W.115, R.162, F.177, Q.209, S.256 Ligands: EDO.8 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.36, A:R.162, A:Q.209, A:S.256

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chaikuad, A. et al., Comparative structural analyses of the NHL domains from the human E3 ligase TRIM-NHL family. Iucrj (2022)

Release Date

2022-05-04

Peptides

E3 ubiquitin-protein ligase TRIM71: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E3 ubiquitin-protein ligase TRIM71

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