SMTL ID : 7qs1.2 (1 other biounit)

Crystal structure of B30.2 PRYSPRY domain of TRIM11

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: R.9, R.12, R.129, K.184 Ligands: EDO.2, EDO.9 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.9 Salt bridges: A:R.12, A:R.129, A:K.184

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: E.6, R.9, R.10, K.184 Ligands: SO4.1, EDO.9 No protein-ligand interaction detected (PLIP) EDO.3: 3 residues within 4Å: Chain A: R.10, K.184, G.185 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.10, A:R.10, A:G.185 EDO.4: 6 residues within 4Å: Chain A: G.13, D.14, F.63, H.68, Y.69, W.70 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.13, A:Y.69, A:Y.69 EDO.5: 4 residues within 4Å: Chain A: R.37, D.39, L.171, S.173 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.39, A:S.173 EDO.6: 1 residues within 4Å: Chain A: Q.42 No protein-ligand interaction detected (PLIP) EDO.7: 1 residues within 4Å: Chain A: R.67 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.67 Water bridges: A:R.67, A:R.67 EDO.8: 4 residues within 4Å: Chain A: E.73, P.127, R.128, R.129 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.73, A:R.129 EDO.9: 5 residues within 4Å: Chain A: R.9, R.129, T.147 Ligands: SO4.1, EDO.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.9, A:R.9, A:R.129, A:R.129, A:T.147

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chaikuad, A. et al., Crystal structure of B30.2 PRYSPRY domain of TRIM11. To Be Published

Release Date

2022-05-04

Peptides

E3 ubiquitin-protein ligase TRIM11: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

E3 ubiquitin-protein ligase TRIM11

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