SMTL ID : 7qs5.1 (1 other biounit)

Crystal structure of B30.2 PRYSPRY domain of TRIM67

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: P.11, G.14, H.15, R.16, I.18 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.10, A:G.14, A:R.16 EDO.2: 3 residues within 4Å: Chain A: I.18, I.19, L.20 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.20, A:L.20 EDO.3: 5 residues within 4Å: Chain A: I.19, T.28, C.29, R.56, R.156 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:C.29 EDO.4: 2 residues within 4Å: Chain A: Y.32, D.33 3 PLIP interactions: 3 interactions with chain A Water bridges: A:S.31, A:S.31, A:Y.32 EDO.5: 5 residues within 4Å: Chain A: N.59, H.60, P.61, N.155, N.157 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:H.60, A:H.60, A:N.155, A:N.155, A:N.157 Water bridges: A:D.62 EDO.6: 3 residues within 4Å: Chain A: R.93, W.95, R.105 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.105, A:R.105 Water bridges: A:R.93, A:R.93 EDO.7: 3 residues within 4Å: Chain A: W.95, N.104, R.105 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.104, A:R.105 Water bridges: A:N.104, A:R.105, A:T.106 EDO.8: 3 residues within 4Å: Chain A: L.122, N.123, H.125 No protein-ligand interaction detected (PLIP) EDO.9: 5 residues within 4Å: Chain A: A.42, F.43, S.44, K.45, H.48 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.44, A:S.44, A:K.45 EDO.10: 4 residues within 4Å: Chain A: R.69, D.82, K.83, W.85 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.69, A:R.69, A:D.82 EDO.11: 4 residues within 4Å: Chain A: M.77, K.80, Y.88, H.102 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.80, A:H.102 EDO.12: 4 residues within 4Å: Chain A: H.98, S.101, T.103, F.141 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.98, A:S.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chaikuad, A. et al., Crystal structure of B30.2 PRYSPRY domain of TRIM67. To Be Published

Release Date

2022-05-04

Peptides

Tripartite motif-containing protein 67: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tripartite motif-containing protein 67

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