SMTL ID : 7qsa.1

Structural basis on the interaction of Scribble PDZ domains with the Tick Born encephalitis virus (TBEV) NS5 protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

homo-dimer

Ligands

1 x LEU- GLU- SER- SER- ILE- ILE: RNA-directed RNA polymerase NS5(Non-covalent)

LEU-GLU-SER-SER-ILE-ILE.1: 28 residues within 4Å: Chain A: A.10, P.13, L.14, G.15, L.16, S.17, I.18, V.19, G.20, H.27, S.39, H.71, Q.72, V.75, L.78, L.79 Chain B: L.14, G.15, L.16, S.17, I.18, V.19, G.20, S.39, H.71, V.75, L.78, L.79 26 PLIP interactions: 15 interactions with chain A, 11 interactions with chain B Hydrophobic interactions: A:L.16, A:V.19, A:H.27, A:L.79, B:V.19, B:H.71, B:L.78, B:L.79 Hydrogen bonds: A:L.14, A:G.15, A:L.16, A:L.16, A:I.18, A:I.18, A:G.20, A:H.71, A:Q.72, B:L.16, B:L.16, B:I.18, B:I.18, B:G.20, B:S.39, B:S.39 Water bridges: A:H.71 Salt bridges: A:H.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Javorsky, A. et al., Molecular basis of Tick Born encephalitis virus NS5 mediated subversion of apico-basal cell polarity signalling. Biochem.J. (2022)

Release Date

2022-08-31

Peptides

Protein scribble homolog: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein scribble homolog

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