SMTL ID : 7qsc.1

GTPase IN COMPLEX WITH GDP.MGF3-

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

hetero-2-2-mer

Ligands

2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 18 residues within 4Å: Chain A: K.191 Chain B: G.13, A.14, C.15, G.16, K.17, T.18, C.19, F.29, X.33, K.117, D.119, L.120, S.159, A.160, K.161 Ligands: MGF.2, MG.3 22 PLIP interactions: 22 interactions with chain B Hydrogen bonds: B:A.14, B:C.15, B:G.16, B:K.17, B:T.18, B:C.19, B:K.117, B:K.117, B:S.159, B:A.160, B:K.161 Water bridges: B:T.18, B:L.20, B:P.30, B:P.30, B:E.31, B:T.36, B:T.36, B:T.36 Salt bridges: B:K.17, B:D.119 pi-Stacking: B:F.29 GDP.4: 18 residues within 4Å: Chain C: K.191 Chain D: G.13, A.14, C.15, G.16, K.17, T.18, C.19, F.29, X.33, K.117, D.119, L.120, S.159, A.160, K.161 Ligands: MGF.5, MG.6 22 PLIP interactions: 19 interactions with chain D, 3 interactions with chain C Hydrogen bonds: D:A.14, D:C.15, D:G.16, D:K.17, D:T.18, D:T.18, D:C.19, D:K.117, D:K.117, D:S.159, D:A.160, D:K.161, C:K.191 Water bridges: D:L.20, D:T.36, D:T.36, D:T.36, C:R.88, C:K.191 Salt bridges: D:K.17, D:D.119 pi-Stacking: D:F.29

2 x MGF: TRIFLUOROMAGNESATE(Non-covalent)

MGF.2: 12 residues within 4Å: Chain B: G.13, A.14, K.17, T.18, X.33, P.35, T.36, A.60, G.61, Q.62 Ligands: GDP.1, MG.3 No protein-ligand interaction detected (PLIP) MGF.5: 11 residues within 4Å: Chain D: G.13, A.14, K.17, X.33, P.35, T.36, A.60, G.61, Q.62 Ligands: GDP.4, MG.6 No protein-ligand interaction detected (PLIP)

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain B: T.18, T.36 Ligands: GDP.1, MGF.2 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:T.18, B:T.36, H2O.4, H2O.4 MG.6: 5 residues within 4Å: Chain D: T.18, T.36, D.58 Ligands: GDP.4, MGF.5 4 PLIP interactions: 2 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:T.18, D:T.36, H2O.10, H2O.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baumann, P. et al., GTPase IN COMPLEX WITH GDP.MGF3-. To Be Published

Release Date

2023-01-25

Peptides

Rho GTPase-activating protein 1: AC
Transforming protein RhoA: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Rho GTPase-activating protein 1

Transforming protein RhoA

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