SMTL ID : 7qsu.1

Crystal structure of homing endonuclease-associated TliVMA intein (C1A, d333-339)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.1: 7 residues within 4Å: Chain A: R.58, K.125, I.126, D.127, G.128, P.246, I.332 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.128 Water bridges: A:D.127 Salt bridges: A:K.125, A:D.127, A:D.127

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.2: 5 residues within 4Å: Chain A: Y.54, F.95, L.106, N.362, L.371 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.54, A:F.95, A:F.95, A:F.95, A:L.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Beyer, H.M. et al., Structural Basis for the Propagation of Homing Endonuclease-Associated Inteins. Front Mol Biosci (2022)

Release Date

2022-03-30

Peptides

V-ATPase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

V-ATPase