SMTL ID : 7qt9.1

Room temperature In-situ SARS-CoV-2 MPRO with bound Z4439011584

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.43 Å

Oligo State

monomer

Ligands

1 x UJ1: N-(5-tert-butyl-1H-pyrazol-3-yl)-N-[(1R)-2-[(2-ethyl-6-methylphenyl)amino]-2-oxo-1-(pyridin-3-yl)ethyl]propanamide(Covalent)

UJ1.1: 21 residues within 4Å: Chain A: L.27, H.41, C.44, M.49, Y.54, F.140, L.141, N.142, G.143, S.144, C.145, H.163, H.164, M.165, E.166, L.167, P.168, H.172, D.187, R.188, Q.189 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:H.41, A:F.140, A:M.165, A:E.166, A:Q.189, A:Q.189 Hydrogen bonds: A:G.143, A:E.166 pi-Stacking: A:H.41

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 7 residues within 4Å: Chain A: M.6, A.7, F.8, S.113, Q.127, D.295, R.298 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.298 pi-Cation interactions: A:F.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gildea, R.J. et al., xia2.multiplex: a multi-crystal data-analysis pipeline. Acta Crystallogr D Struct Biol (2022)

Release Date

2022-05-04

Peptides

Non-structural protein 6: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Non-structural protein 6

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