SMTL ID : 7qu0.1

X-ray structure of FAD domain of NqrF of Klebsiella pneumoniae

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 22 residues within 4Å: Chain A: Y.40, R.83, A.84, Y.85, S.86, N.100, V.101, R.102, A.104, T.105, P.106, P.107, I.110, A.113, P.114, P.115, G.116, I.117, M.118, S.119, A.156, F.279 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:Y.40, A:A.84, A:F.279 Hydrogen bonds: A:A.84, A:A.84, A:Y.85, A:S.86, A:N.100, A:R.102, A:A.104, A:I.117, A:M.118, A:S.119 Water bridges: A:N.100, A:T.105, A:T.105, A:F.279 Salt bridges: A:R.83, A:R.83 pi-Stacking: A:Y.85, A:F.279

1 x F2L: ~{N}-[2,6-bis(fluoranyl)phenyl]ethanamide(Non-covalent)

F2L.2: 6 residues within 4Å: Chain A: A.184, S.213, F.227, P.253, V.255, M.256 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.227, A:V.255 Water bridges: A:I.228, A:I.228

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 5 residues within 4Å: Chain A: V.50, Y.121, S.124, L.125, D.129 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.126 DMS.4: 5 residues within 4Å: Chain A: N.69, R.72, Y.73, P.111, D.112 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.69

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kaminski, J.W. et al., Fast fragment- and compound-screening pipeline at the Swiss Light Source. Acta Crystallogr D Struct Biol (2022)

Release Date

2022-02-09

Peptides

Na(+)-translocating NADH-quinone reductase subunit F: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Na(+)-translocating NADH-quinone reductase subunit F

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