SMTL ID : 7quj.1

Structure of NsNEPS2, a 7S-cis-trans nepetalactone synthase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)(Covalent)

NAD.1: 31 residues within 4Å: Chain A: G.34, A.36, S.37, G.38, I.39, D.59, I.60, Q.61, C.82, D.83, I.84, A.85, N.110, A.111, G.112, I.113, V.137, T.166, S.167, S.168, Y.181, K.185, P.211, M.212, A.213, V.214, T.216, P.217, L.218, T.219, R.221 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:P.211 Hydrogen bonds: A:S.37, A:S.37, A:I.39, A:D.59, A:D.59, A:I.60, A:Q.61, A:D.83, A:D.83, A:I.84, A:N.110, A:K.185, A:K.185, A:V.214, A:V.214, A:T.216, A:L.218, A:R.221 Water bridges: A:G.40 NAD.2: 30 residues within 4Å: Chain B: G.34, A.36, S.37, G.38, I.39, D.59, I.60, Q.61, C.82, D.83, I.84, A.85, N.110, A.111, G.112, I.113, V.137, T.166, S.167, S.168, Y.181, K.185, P.211, M.212, A.213, V.214, T.216, P.217, L.218, T.219 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:P.211 Hydrogen bonds: B:S.37, B:I.39, B:I.60, B:Q.61, B:Q.61, B:D.83, B:I.84, B:N.110, B:Y.181, B:K.185, B:V.214, B:V.214, B:L.218 Water bridges: B:G.40, B:R.221 NAD.3: 31 residues within 4Å: Chain C: G.34, A.36, S.37, G.38, I.39, D.59, I.60, Q.61, C.82, D.83, I.84, A.85, N.110, A.111, G.112, I.113, V.137, T.166, S.167, S.168, Y.181, K.185, P.211, M.212, A.213, V.214, T.216, P.217, L.218, T.219, R.221 19 PLIP interactions: 19 interactions with chain C Hydrophobic interactions: C:P.211 Hydrogen bonds: C:S.37, C:I.39, C:I.60, C:Q.61, C:D.83, C:I.84, C:A.85, C:Y.181, C:Y.181, C:K.185, C:K.185, C:V.214, C:V.214, C:T.216, C:L.218, C:R.221 Water bridges: C:G.40, C:N.110 NAD.4: 32 residues within 4Å: Chain D: G.34, A.36, S.37, G.38, I.39, A.58, D.59, I.60, Q.61, C.82, D.83, I.84, A.85, N.110, A.111, G.112, I.113, V.137, T.166, S.167, S.168, Y.181, K.185, P.211, M.212, A.213, V.214, T.216, P.217, L.218, T.219, R.221 21 PLIP interactions: 21 interactions with chain D Hydrophobic interactions: D:P.211 Hydrogen bonds: D:G.34, D:S.37, D:I.39, D:D.59, D:I.60, D:D.83, D:I.84, D:N.110, D:G.112, D:Y.181, D:Y.181, D:K.185, D:V.214, D:V.214, D:L.218, D:R.221 Water bridges: D:G.40, D:N.110, D:R.221, D:R.221

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hernandez Lozada, N.J. et al., Biocatalytic routes to stereo-divergent iridoids. Nat Commun (2022)

Release Date

2022-12-28

Peptides

NsNEPS2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

NsNEPS2