SMTL ID : 7quy.1 (1 other biounit)

Alcohol Dehydrogenase from Thauera aromatica complexed with NADH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 25 residues within 4Å: Chain A: H.43, D.156, T.160, I.179, G.180, V.181, G.182, G.183, V.184, D.203, V.204, K.208, C.254, S.255, G.256, T.257, A.259, G.260, V.277, G.278, F.279, N.301, W.302, G.303 Chain B: M.292 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:T.160, A:V.184 Hydrogen bonds: A:T.160, A:V.181, A:G.182, A:G.182, A:V.184, A:G.185, A:K.208, A:K.208, A:T.257, A:T.257, A:G.260, A:F.279, A:N.301, A:N.301, A:G.303 Salt bridges: A:H.43, A:K.208 NAD.6: 25 residues within 4Å: Chain A: M.292 Chain B: H.43, D.156, T.160, I.179, G.180, G.182, G.183, V.184, D.203, V.204, K.208, A.223, C.254, S.255, G.256, T.257, A.259, G.260, V.277, G.278, F.279, N.301, W.302, G.303 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:T.160, B:V.184 Hydrogen bonds: B:G.182, B:V.184, B:V.204, B:K.208, B:T.257, B:G.260, B:F.279, B:N.301, B:N.301, B:G.303 Salt bridges: B:H.43

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: R.245, L.246, T.247, R.248 Chain B: R.109 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Salt bridges: B:R.109, A:R.248 Hydrogen bonds: A:L.246, A:T.247 SO4.3: 1 residues within 4Å: Chain A: R.70 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.70 SO4.7: 7 residues within 4Å: Chain A: E.98, L.99, R.109 Chain B: R.245, L.246, T.247, R.248 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:L.246, B:T.247, B:T.247 Salt bridges: B:R.248, A:R.109 SO4.8: 3 residues within 4Å: Chain B: R.7, F.22, E.23 3 PLIP interactions: 3 interactions with chain B Water bridges: B:E.23, B:E.23 Salt bridges: B:R.7

4 x ZN: ZINC ION(Non-covalent)

ZN.4: 5 residues within 4Å: Chain A: C.42, H.65, E.66, D.156, R.350 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.42, A:H.65, A:E.66, A:D.156 ZN.5: 4 residues within 4Å: Chain A: C.94, C.97, C.100, C.108 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.94, A:C.97, A:C.100, A:C.108 ZN.9: 5 residues within 4Å: Chain B: C.42, H.65, E.66, D.156, R.350 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.42, B:H.65, B:E.66, B:D.156 ZN.10: 5 residues within 4Å: Chain B: C.94, G.95, C.97, C.100, C.108 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.94, B:C.97, B:C.100, B:C.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stark, F. et al., Advanced Insights into Catalytic and Structural Features of the Zinc-Dependent Alcohol Dehydrogenase from Thauera aromatica. Chembiochem (2022)

Release Date

2022-08-17

Peptides

6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

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