- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
NAP.2: 24 residues within 4Å:- Chain A: R.12, G.71, D.72, G.73, L.76, R.94, F.99, N.146, D.147, T.184, T.187, A.188, Y.189, S.192, D.245, G.246, Q.247
- Chain B: T.156, R.157, M.158, K.174, D.176, Y.211, H.213
29 PLIP interactions:17 interactions with chain A, 12 interactions with chain B- Hydrogen bonds: A:R.12, A:D.72, A:D.72, A:G.73, A:N.146, A:D.147, A:T.184, A:Y.189, A:S.192, A:D.245, A:Q.247, B:M.158, B:K.174, B:K.174, B:D.176, B:D.176
- Water bridges: A:K.284, A:K.284, B:R.157, B:R.157, B:R.157, B:R.157, B:R.157
- Salt bridges: A:R.12, A:R.94, A:K.284, B:R.157, B:R.157
- pi-Stacking: A:Y.189
NAP.4: 20 residues within 4Å:- Chain A: T.156, R.157, M.158, K.174, D.176, Y.211
- Chain B: G.71, D.72, G.73, L.76, R.94, F.99, N.146, D.147, T.184, T.187, A.188, Y.189, S.192, D.245
18 PLIP interactions:6 interactions with chain A, 12 interactions with chain B- Hydrogen bonds: A:M.158, A:M.158, A:K.174, A:K.174, A:D.176, A:D.176, B:D.72, B:G.73, B:N.146, B:D.147, B:T.184, B:T.187, B:Y.189, B:S.192, B:D.245
- Water bridges: B:D.147
- Salt bridges: B:R.94
- pi-Stacking: B:Y.189
NAP.6: 24 residues within 4Å:- Chain C: R.12, G.71, D.72, G.73, L.76, R.94, F.99, N.146, D.147, T.184, T.187, A.188, Y.189, S.192, D.245, G.246, Q.247
- Chain D: T.156, R.157, M.158, K.174, D.176, Y.211, H.213
29 PLIP interactions:17 interactions with chain C, 12 interactions with chain D- Hydrogen bonds: C:R.12, C:D.72, C:G.73, C:N.146, C:D.147, C:T.184, C:T.187, C:Y.189, C:S.192, C:D.245, C:Q.247, D:M.158, D:K.174, D:K.174, D:D.176, D:D.176
- Water bridges: C:K.284, C:K.284, D:R.157, D:R.157, D:R.157, D:R.157, D:R.157
- Salt bridges: C:R.12, C:R.94, C:K.284, D:R.157, D:R.157
- pi-Stacking: C:Y.189
NAP.8: 20 residues within 4Å:- Chain C: T.156, R.157, M.158, K.174, D.176, Y.211
- Chain D: G.71, D.72, G.73, L.76, R.94, F.99, N.146, D.147, T.184, T.187, A.188, Y.189, S.192, D.245
18 PLIP interactions:11 interactions with chain D, 7 interactions with chain C- Hydrogen bonds: D:D.72, D:G.73, D:N.146, D:D.147, D:T.184, D:Y.189, D:S.192, D:D.245, C:M.158, C:M.158, C:K.174, C:K.174, C:D.176, C:D.176
- Water bridges: D:A.190, C:T.156
- Salt bridges: D:R.94
- pi-Stacking: D:Y.189
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Rahimova, R. et al., Structure-based design, synthesis and biological evaluation of a NAD + analogue targeting Pseudomonas aeruginosa NAD kinase. Febs J. (2023)
- Release Date
- 2022-09-14
- Peptides
- NAD kinase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Rahimova, R. et al., Structure-based design, synthesis and biological evaluation of a NAD + analogue targeting Pseudomonas aeruginosa NAD kinase. Febs J. (2023)
- Release Date
- 2022-09-14
- Peptides
- NAD kinase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B