SMTL ID : 7qwi.1

Vanadate complex of the vanadium-dependent bromoperoxidase from Corallina pilulifera

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-12-mer

Ligands

12 x VO4: VANADATE ION(Non-covalent)

VO4.1: 10 residues within 4Å: Chain A: K.400, R.408, P.478, H.480, S.485, G.486, H.487, R.547, H.553 Ligands: BR.3 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:K.400, A:R.408, A:R.408, A:G.486, A:H.487, A:H.487, A:R.547, A:R.547, A:R.547 VO4.26: 10 residues within 4Å: Chain B: K.400, R.408, P.478, H.480, S.485, G.486, H.487, R.547, H.553 Ligands: BR.28 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:K.400, B:R.408, B:R.408, B:G.486, B:H.487, B:R.547, B:R.547, B:R.547 VO4.49: 9 residues within 4Å: Chain C: K.400, R.408, P.478, H.480, S.485, G.486, H.487, R.547, H.553 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:K.400, C:R.408, C:R.408, C:G.486, C:H.487, C:R.547, C:R.547, C:R.547 VO4.72: 10 residues within 4Å: Chain D: K.400, R.408, P.478, H.480, S.485, G.486, H.487, R.547, H.553 Ligands: BR.74 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:K.400, D:R.408, D:R.408, D:G.486, D:H.487, D:H.487, D:R.547, D:R.547 VO4.90: 10 residues within 4Å: Chain E: K.400, R.408, P.478, H.480, S.485, G.486, H.487, R.547, H.553 Ligands: BR.92 8 PLIP interactions: 8 interactions with chain E Hydrogen bonds: E:K.400, E:R.408, E:R.408, E:G.486, E:H.487, E:R.547, E:R.547, E:R.547 VO4.115: 10 residues within 4Å: Chain F: K.400, R.408, P.478, H.480, S.485, G.486, H.487, R.547, H.553 Ligands: BR.117 9 PLIP interactions: 9 interactions with chain F Hydrogen bonds: F:K.400, F:R.408, F:R.408, F:G.486, F:H.487, F:H.487, F:R.547, F:R.547, F:R.547 VO4.138: 9 residues within 4Å: Chain G: K.400, R.408, P.478, H.480, S.485, G.486, H.487, R.547, H.553 9 PLIP interactions: 9 interactions with chain G Hydrogen bonds: G:K.400, G:R.408, G:R.408, G:G.486, G:H.487, G:H.487, G:R.547, G:R.547, G:R.547 VO4.161: 10 residues within 4Å: Chain H: K.400, R.408, P.478, H.480, S.485, G.486, H.487, R.547, H.553 Ligands: BR.163 8 PLIP interactions: 8 interactions with chain H Hydrogen bonds: H:K.400, H:R.408, H:R.408, H:G.486, H:H.487, H:H.487, H:R.547, H:R.547 VO4.179: 10 residues within 4Å: Chain I: K.400, R.408, P.478, H.480, S.485, G.486, H.487, R.547, H.553 Ligands: BR.181 8 PLIP interactions: 8 interactions with chain I Hydrogen bonds: I:K.400, I:R.408, I:R.408, I:G.486, I:H.487, I:R.547, I:R.547, I:R.547 VO4.204: 10 residues within 4Å: Chain J: K.400, R.408, P.478, H.480, S.485, G.486, H.487, R.547, H.553 Ligands: BR.206 9 PLIP interactions: 9 interactions with chain J Hydrogen bonds: J:K.400, J:R.408, J:R.408, J:G.486, J:H.487, J:H.487, J:R.547, J:R.547, J:R.547 VO4.227: 9 residues within 4Å: Chain K: K.400, R.408, P.478, H.480, S.485, G.486, H.487, R.547, H.553 8 PLIP interactions: 8 interactions with chain K Hydrogen bonds: K:K.400, K:R.408, K:R.408, K:G.486, K:H.487, K:R.547, K:R.547, K:R.547 VO4.250: 10 residues within 4Å: Chain L: K.400, R.408, P.478, H.480, S.485, G.486, H.487, R.547, H.553 Ligands: BR.252 8 PLIP interactions: 8 interactions with chain L Hydrogen bonds: L:K.400, L:R.408, L:R.408, L:G.486, L:H.487, L:H.487, L:R.547, L:R.547

12 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: F.361, Q.363, D.365, D.368, Q.370 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:Q.363, A:D.365, A:D.368, A:Q.370, H2O.18 CA.27: 5 residues within 4Å: Chain B: F.361, Q.363, D.365, D.368, Q.370 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:Q.363, B:D.365, B:D.368, B:Q.370, H2O.43 CA.50: 5 residues within 4Å: Chain C: F.361, Q.363, D.365, D.368, Q.370 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:Q.363, C:D.365, C:D.368, C:Q.370, H2O.69 CA.73: 5 residues within 4Å: Chain D: F.361, Q.363, D.365, D.368, Q.370 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:Q.363, D:D.365, D:D.368, D:Q.370, H2O.102 CA.91: 5 residues within 4Å: Chain E: F.361, Q.363, D.365, D.368, Q.370 5 PLIP interactions: 4 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:Q.363, E:D.365, E:D.368, E:Q.370, H2O.132 CA.116: 5 residues within 4Å: Chain F: F.361, Q.363, D.365, D.368, Q.370 5 PLIP interactions: 4 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:Q.363, F:D.365, F:D.368, F:Q.370, H2O.157 CA.139: 5 residues within 4Å: Chain G: F.361, Q.363, D.365, D.368, Q.370 5 PLIP interactions: 4 interactions with chain G, 1 Ligand-Water interactions Metal complexes: G:Q.363, G:D.365, G:D.368, G:Q.370, H2O.183 CA.162: 5 residues within 4Å: Chain H: F.361, Q.363, D.365, D.368, Q.370 5 PLIP interactions: 4 interactions with chain H, 1 Ligand-Water interactions Metal complexes: H:Q.363, H:D.365, H:D.368, H:Q.370, H2O.215 CA.180: 5 residues within 4Å: Chain I: F.361, Q.363, D.365, D.368, Q.370 5 PLIP interactions: 4 interactions with chain I, 1 Ligand-Water interactions Metal complexes: I:Q.363, I:D.365, I:D.368, I:Q.370, H2O.245 CA.205: 5 residues within 4Å: Chain J: F.361, Q.363, D.365, D.368, Q.370 5 PLIP interactions: 4 interactions with chain J, 1 Ligand-Water interactions Metal complexes: J:Q.363, J:D.365, J:D.368, J:Q.370, H2O.270 CA.228: 5 residues within 4Å: Chain K: F.361, Q.363, D.365, D.368, Q.370 5 PLIP interactions: 4 interactions with chain K, 1 Ligand-Water interactions Metal complexes: K:Q.363, K:D.365, K:D.368, K:Q.370, H2O.296 CA.251: 5 residues within 4Å: Chain L: F.361, Q.363, D.365, D.368, Q.370 5 PLIP interactions: 4 interactions with chain L, 1 Ligand-Water interactions Metal complexes: L:Q.363, L:D.365, L:D.368, L:Q.370, H2O.329

36 x BR: BROMIDE ION(Non-covalent)

BR.3: 7 residues within 4Å: Chain A: L.393, R.397, H.480, G.486, H.553 Chain B: F.373 Ligands: VO4.1 Ligand excluded by PLIP BR.5: 3 residues within 4Å: Chain A: S.10, R.11, A.12 Ligand excluded by PLIP BR.13: 3 residues within 4Å: Chain A: I.570, K.590 Chain H: F.35 Ligand excluded by PLIP BR.28: 7 residues within 4Å: Chain A: F.373 Chain B: L.393, R.397, H.480, G.486, H.553 Ligands: VO4.26 Ligand excluded by PLIP BR.30: 4 residues within 4Å: Chain A: V.31 Chain B: S.10, R.11, A.12 Ligand excluded by PLIP BR.38: 4 residues within 4Å: Chain B: I.570, K.590, I.596 Chain J: F.35 Ligand excluded by PLIP BR.51: 6 residues within 4Å: Chain C: L.393, R.397, H.480, G.486, H.553 Chain D: F.373 Ligand excluded by PLIP BR.53: 4 residues within 4Å: Chain C: S.10, R.11, A.12 Chain D: V.31 Ligand excluded by PLIP BR.59: 3 residues within 4Å: Chain A: F.35 Chain C: I.570, K.590 Ligand excluded by PLIP BR.74: 7 residues within 4Å: Chain C: F.373 Chain D: L.393, R.397, H.480, G.486, H.553 Ligands: VO4.72 Ligand excluded by PLIP BR.76: 4 residues within 4Å: Chain C: V.31 Chain D: S.10, R.11, A.12 Ligand excluded by PLIP BR.83: 4 residues within 4Å: Chain D: I.570, K.590, I.596 Chain K: F.35 Ligand excluded by PLIP BR.92: 7 residues within 4Å: Chain E: L.393, R.397, H.480, G.486, H.553 Chain F: F.373 Ligands: VO4.90 Ligand excluded by PLIP BR.94: 3 residues within 4Å: Chain E: S.10, R.11, A.12 Ligand excluded by PLIP BR.102: 3 residues within 4Å: Chain E: I.570, K.590 Chain L: F.35 Ligand excluded by PLIP BR.117: 7 residues within 4Å: Chain E: F.373 Chain F: L.393, R.397, H.480, G.486, H.553 Ligands: VO4.115 Ligand excluded by PLIP BR.119: 4 residues within 4Å: Chain E: V.31 Chain F: S.10, R.11, A.12 Ligand excluded by PLIP BR.127: 4 residues within 4Å: Chain B: F.35 Chain F: I.570, K.590, I.596 Ligand excluded by PLIP BR.140: 6 residues within 4Å: Chain G: L.393, R.397, H.480, G.486, H.553 Chain H: F.373 Ligand excluded by PLIP BR.142: 4 residues within 4Å: Chain G: S.10, R.11, A.12 Chain H: V.31 Ligand excluded by PLIP BR.148: 3 residues within 4Å: Chain E: F.35 Chain G: I.570, K.590 Ligand excluded by PLIP BR.163: 7 residues within 4Å: Chain G: F.373 Chain H: L.393, R.397, H.480, G.486, H.553 Ligands: VO4.161 Ligand excluded by PLIP BR.165: 4 residues within 4Å: Chain G: V.31 Chain H: S.10, R.11, A.12 Ligand excluded by PLIP BR.172: 4 residues within 4Å: Chain C: F.35 Chain H: I.570, K.590, I.596 Ligand excluded by PLIP BR.181: 7 residues within 4Å: Chain I: L.393, R.397, H.480, G.486, H.553 Chain J: F.373 Ligands: VO4.179 Ligand excluded by PLIP BR.183: 3 residues within 4Å: Chain I: S.10, R.11, A.12 Ligand excluded by PLIP BR.191: 3 residues within 4Å: Chain D: F.35 Chain I: I.570, K.590 Ligand excluded by PLIP BR.206: 7 residues within 4Å: Chain I: F.373 Chain J: L.393, R.397, H.480, G.486, H.553 Ligands: VO4.204 Ligand excluded by PLIP BR.208: 4 residues within 4Å: Chain I: V.31 Chain J: S.10, R.11, A.12 Ligand excluded by PLIP BR.216: 4 residues within 4Å: Chain F: F.35 Chain J: I.570, K.590, I.596 Ligand excluded by PLIP BR.229: 6 residues within 4Å: Chain K: L.393, R.397, H.480, G.486, H.553 Chain L: F.373 Ligand excluded by PLIP BR.231: 4 residues within 4Å: Chain K: S.10, R.11, A.12 Chain L: V.31 Ligand excluded by PLIP BR.237: 3 residues within 4Å: Chain I: F.35 Chain K: I.570, K.590 Ligand excluded by PLIP BR.252: 7 residues within 4Å: Chain K: F.373 Chain L: L.393, R.397, H.480, G.486, H.553 Ligands: VO4.250 Ligand excluded by PLIP BR.254: 4 residues within 4Å: Chain K: V.31 Chain L: S.10, R.11, A.12 Ligand excluded by PLIP BR.261: 4 residues within 4Å: Chain G: F.35 Chain L: I.570, K.590, I.596 Ligand excluded by PLIP

54 x NA: SODIUM ION(Non-functional Binders)

NA.4: 3 residues within 4Å: Chain A: N.45, D.47, N.50 Ligand excluded by PLIP NA.8: 3 residues within 4Å: Chain A: E.174, E.177, K.516 Ligand excluded by PLIP NA.10: 5 residues within 4Å: Chain A: D.356, K.499, A.500, F.502, N.587 Ligand excluded by PLIP NA.24: 3 residues within 4Å: Chain A: T.288, Y.315, E.316 Ligand excluded by PLIP NA.29: 3 residues within 4Å: Chain B: N.45, D.47, N.50 Ligand excluded by PLIP NA.34: 3 residues within 4Å: Chain B: D.6 Chain C: D.6 Chain I: D.6 Ligand excluded by PLIP NA.35: 4 residues within 4Å: Chain B: E.174, E.177, K.182, K.516 Ligand excluded by PLIP NA.37: 5 residues within 4Å: Chain B: D.356, K.499, A.500, F.502, N.587 Ligand excluded by PLIP NA.48: 1 residues within 4Å: Chain B: V.372 Ligand excluded by PLIP NA.52: 3 residues within 4Å: Chain C: N.45, D.47, N.50 Ligand excluded by PLIP NA.56: 3 residues within 4Å: Chain C: E.174, E.177, K.516 Ligand excluded by PLIP NA.58: 5 residues within 4Å: Chain C: D.356, K.499, A.500, F.502, N.587 Ligand excluded by PLIP NA.68: 1 residues within 4Å: Chain C: D.458 Ligand excluded by PLIP NA.69: 5 residues within 4Å: Chain D: D.6 Chain H: D.6 Chain L: D.6 Ligands: NA.158, NA.247 Ligand excluded by PLIP NA.75: 3 residues within 4Å: Chain D: N.45, D.47, N.50 Ligand excluded by PLIP NA.81: 4 residues within 4Å: Chain D: E.174, E.177, K.182, K.516 Ligand excluded by PLIP NA.82: 5 residues within 4Å: Chain D: D.356, K.499, A.500, F.502, N.587 Ligand excluded by PLIP NA.89: 6 residues within 4Å: Chain D: Q.193, E.439, L.440, G.441, D.442, I.443 Ligand excluded by PLIP NA.93: 3 residues within 4Å: Chain E: N.45, D.47, N.50 Ligand excluded by PLIP NA.97: 3 residues within 4Å: Chain E: E.174, E.177, K.516 Ligand excluded by PLIP NA.99: 5 residues within 4Å: Chain E: D.356, K.499, A.500, F.502, N.587 Ligand excluded by PLIP NA.113: 3 residues within 4Å: Chain E: T.288, Y.315, E.316 Ligand excluded by PLIP NA.118: 3 residues within 4Å: Chain F: N.45, D.47, N.50 Ligand excluded by PLIP NA.123: 3 residues within 4Å: Chain A: D.6 Chain F: D.6 Chain G: D.6 Ligand excluded by PLIP NA.124: 4 residues within 4Å: Chain F: E.174, E.177, K.182, K.516 Ligand excluded by PLIP NA.126: 5 residues within 4Å: Chain F: D.356, K.499, A.500, F.502, N.587 Ligand excluded by PLIP NA.137: 1 residues within 4Å: Chain F: V.372 Ligand excluded by PLIP NA.141: 3 residues within 4Å: Chain G: N.45, D.47, N.50 Ligand excluded by PLIP NA.145: 3 residues within 4Å: Chain G: E.174, E.177, K.516 Ligand excluded by PLIP NA.147: 5 residues within 4Å: Chain G: D.356, K.499, A.500, F.502, N.587 Ligand excluded by PLIP NA.157: 1 residues within 4Å: Chain G: D.458 Ligand excluded by PLIP NA.158: 5 residues within 4Å: Chain D: D.6 Chain H: D.6 Chain L: D.6 Ligands: NA.69, NA.247 Ligand excluded by PLIP NA.164: 3 residues within 4Å: Chain H: N.45, D.47, N.50 Ligand excluded by PLIP NA.170: 4 residues within 4Å: Chain H: E.174, E.177, K.182, K.516 Ligand excluded by PLIP NA.171: 5 residues within 4Å: Chain H: D.356, K.499, A.500, F.502, N.587 Ligand excluded by PLIP NA.178: 6 residues within 4Å: Chain H: Q.193, E.439, L.440, G.441, D.442, I.443 Ligand excluded by PLIP NA.182: 3 residues within 4Å: Chain I: N.45, D.47, N.50 Ligand excluded by PLIP NA.186: 3 residues within 4Å: Chain I: E.174, E.177, K.516 Ligand excluded by PLIP NA.188: 5 residues within 4Å: Chain I: D.356, K.499, A.500, F.502, N.587 Ligand excluded by PLIP NA.202: 3 residues within 4Å: Chain I: T.288, Y.315, E.316 Ligand excluded by PLIP NA.207: 3 residues within 4Å: Chain J: N.45, D.47, N.50 Ligand excluded by PLIP NA.212: 3 residues within 4Å: Chain E: D.6 Chain J: D.6 Chain K: D.6 Ligand excluded by PLIP NA.213: 4 residues within 4Å: Chain J: E.174, E.177, K.182, K.516 Ligand excluded by PLIP NA.215: 5 residues within 4Å: Chain J: D.356, K.499, A.500, F.502, N.587 Ligand excluded by PLIP NA.226: 1 residues within 4Å: Chain J: V.372 Ligand excluded by PLIP NA.230: 3 residues within 4Å: Chain K: N.45, D.47, N.50 Ligand excluded by PLIP NA.234: 3 residues within 4Å: Chain K: E.174, E.177, K.516 Ligand excluded by PLIP NA.236: 5 residues within 4Å: Chain K: D.356, K.499, A.500, F.502, N.587 Ligand excluded by PLIP NA.246: 1 residues within 4Å: Chain K: D.458 Ligand excluded by PLIP NA.247: 5 residues within 4Å: Chain D: D.6 Chain H: D.6 Chain L: D.6 Ligands: NA.69, NA.158 Ligand excluded by PLIP NA.253: 3 residues within 4Å: Chain L: N.45, D.47, N.50 Ligand excluded by PLIP NA.259: 4 residues within 4Å: Chain L: E.174, E.177, K.182, K.516 Ligand excluded by PLIP NA.260: 5 residues within 4Å: Chain L: D.356, K.499, A.500, F.502, N.587 Ligand excluded by PLIP NA.267: 6 residues within 4Å: Chain L: Q.193, E.439, L.440, G.441, D.442, I.443 Ligand excluded by PLIP

33 x 144: TRIS-HYDROXYMETHYL-METHYL-AMMONIUM(Non-covalent)

144.6: 8 residues within 4Å: Chain A: D.52, P.53, P.74, D.75, L.78 Chain C: P.357, Q.362, Q.363 Ligand excluded by PLIP 144.11: 5 residues within 4Å: Chain A: F.175, S.176, F.178, D.179, E.513 Ligand excluded by PLIP 144.25: 8 residues within 4Å: Chain A: F.334, A.336 Chain B: A.274, Y.275, G.276, L.349, L.382 Ligands: PEG.22 Ligand excluded by PLIP 144.31: 6 residues within 4Å: Chain B: D.52, P.53, D.75, L.78 Chain F: P.357, Q.362 Ligand excluded by PLIP 144.32: 6 residues within 4Å: Chain A: A.274, G.276, L.349, L.382 Chain B: F.334, A.336 Ligand excluded by PLIP 144.47: 5 residues within 4Å: Chain B: F.175, S.176, F.178, D.179, E.513 Ligand excluded by PLIP 144.54: 8 residues within 4Å: Chain C: D.52, P.53, P.74, D.75, L.78 Chain H: P.357, Q.362, Q.363 Ligand excluded by PLIP 144.67: 5 residues within 4Å: Chain C: F.175, S.176, F.178, D.179, E.513 Ligand excluded by PLIP 144.70: 7 residues within 4Å: Chain C: F.334 Chain D: A.274, Y.275, G.276, L.349, L.382 Ligands: EDO.85 Ligand excluded by PLIP 144.77: 7 residues within 4Å: Chain D: D.52, P.53, P.74, D.75, L.78 Chain I: P.357, Q.362 Ligand excluded by PLIP 144.78: 7 residues within 4Å: Chain C: A.274, Y.275, G.276, L.346, L.349, L.382 Chain D: F.334 Ligand excluded by PLIP 144.95: 8 residues within 4Å: Chain E: D.52, P.53, P.74, D.75, L.78 Chain G: P.357, Q.362, Q.363 Ligand excluded by PLIP 144.100: 5 residues within 4Å: Chain E: F.175, S.176, F.178, D.179, E.513 Ligand excluded by PLIP 144.114: 8 residues within 4Å: Chain E: F.334, A.336 Chain F: A.274, Y.275, G.276, L.349, L.382 Ligands: PEG.111 Ligand excluded by PLIP 144.120: 6 residues within 4Å: Chain F: D.52, P.53, D.75, L.78 Chain J: P.357, Q.362 Ligand excluded by PLIP 144.121: 6 residues within 4Å: Chain E: A.274, G.276, L.349, L.382 Chain F: F.334, A.336 Ligand excluded by PLIP 144.136: 5 residues within 4Å: Chain F: F.175, S.176, F.178, D.179, E.513 Ligand excluded by PLIP 144.143: 8 residues within 4Å: Chain G: D.52, P.53, P.74, D.75, L.78 Chain L: P.357, Q.362, Q.363 Ligand excluded by PLIP 144.156: 5 residues within 4Å: Chain G: F.175, S.176, F.178, D.179, E.513 Ligand excluded by PLIP 144.159: 7 residues within 4Å: Chain G: F.334 Chain H: A.274, Y.275, G.276, L.349, L.382 Ligands: EDO.174 Ligand excluded by PLIP 144.166: 7 residues within 4Å: Chain A: P.357, Q.362 Chain H: D.52, P.53, P.74, D.75, L.78 Ligand excluded by PLIP 144.167: 7 residues within 4Å: Chain G: A.274, Y.275, G.276, L.346, L.349, L.382 Chain H: F.334 Ligand excluded by PLIP 144.184: 8 residues within 4Å: Chain I: D.52, P.53, P.74, D.75, L.78 Chain K: P.357, Q.362, Q.363 Ligand excluded by PLIP 144.189: 5 residues within 4Å: Chain I: F.175, S.176, F.178, D.179, E.513 Ligand excluded by PLIP 144.203: 8 residues within 4Å: Chain I: F.334, A.336 Chain J: A.274, Y.275, G.276, L.349, L.382 Ligands: PEG.200 Ligand excluded by PLIP 144.209: 6 residues within 4Å: Chain B: P.357, Q.362 Chain J: D.52, P.53, D.75, L.78 Ligand excluded by PLIP 144.210: 6 residues within 4Å: Chain I: A.274, G.276, L.349, L.382 Chain J: F.334, A.336 Ligand excluded by PLIP 144.225: 5 residues within 4Å: Chain J: F.175, S.176, F.178, D.179, E.513 Ligand excluded by PLIP 144.232: 8 residues within 4Å: Chain D: P.357, Q.362, Q.363 Chain K: D.52, P.53, P.74, D.75, L.78 Ligand excluded by PLIP 144.245: 5 residues within 4Å: Chain K: F.175, S.176, F.178, D.179, E.513 Ligand excluded by PLIP 144.248: 7 residues within 4Å: Chain K: F.334 Chain L: A.274, Y.275, G.276, L.349, L.382 Ligands: EDO.263 Ligand excluded by PLIP 144.255: 7 residues within 4Å: Chain E: P.357, Q.362 Chain L: D.52, P.53, P.74, D.75, L.78 Ligand excluded by PLIP 144.256: 7 residues within 4Å: Chain K: A.274, Y.275, G.276, L.346, L.349, L.382 Chain L: F.334 Ligand excluded by PLIP

39 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.7: 4 residues within 4Å: Chain A: I.213, R.214, R.216, I.229 Ligand excluded by PLIP PEG.9: 2 residues within 4Å: Chain A: F.269, F.512 Ligand excluded by PLIP PEG.12: 3 residues within 4Å: Chain A: E.119 Chain B: G.256, N.257 Ligand excluded by PLIP PEG.21: 7 residues within 4Å: Chain A: K.248, Q.249, I.250, S.252, A.253, A.274, A.350 Ligand excluded by PLIP PEG.22: 10 residues within 4Å: Chain A: A.336, L.337, Y.338, A.389 Chain B: F.373, S.378, A.379, L.382, S.383 Ligands: 144.25 Ligand excluded by PLIP PEG.23: 4 residues within 4Å: Chain A: K.366, L.367 Chain B: R.101 Ligands: EDO.41 Ligand excluded by PLIP PEG.33: 4 residues within 4Å: Chain B: I.213, R.214, R.216, I.229 Ligand excluded by PLIP PEG.36: 4 residues within 4Å: Chain B: F.269, F.512, L.521, K.523 Ligand excluded by PLIP PEG.46: 1 residues within 4Å: Chain B: D.179 Ligand excluded by PLIP PEG.55: 3 residues within 4Å: Chain C: I.213, R.214, R.216 Ligand excluded by PLIP PEG.57: 4 residues within 4Å: Chain C: F.269, F.512, L.521, K.523 Ligand excluded by PLIP PEG.65: 2 residues within 4Å: Chain C: K.366 Chain D: R.101 Ligand excluded by PLIP PEG.80: 4 residues within 4Å: Chain D: I.213, R.214, R.216, I.229 Ligand excluded by PLIP PEG.96: 4 residues within 4Å: Chain E: I.213, R.214, R.216, I.229 Ligand excluded by PLIP PEG.98: 2 residues within 4Å: Chain E: F.269, F.512 Ligand excluded by PLIP PEG.101: 3 residues within 4Å: Chain E: E.119 Chain F: G.256, N.257 Ligand excluded by PLIP PEG.110: 7 residues within 4Å: Chain E: K.248, Q.249, I.250, S.252, A.253, A.274, A.350 Ligand excluded by PLIP PEG.111: 10 residues within 4Å: Chain E: A.336, L.337, Y.338, A.389 Chain F: F.373, S.378, A.379, L.382, S.383 Ligands: 144.114 Ligand excluded by PLIP PEG.112: 4 residues within 4Å: Chain E: K.366, L.367 Chain F: R.101 Ligands: EDO.130 Ligand excluded by PLIP PEG.122: 4 residues within 4Å: Chain F: I.213, R.214, R.216, I.229 Ligand excluded by PLIP PEG.125: 4 residues within 4Å: Chain F: F.269, F.512, L.521, K.523 Ligand excluded by PLIP PEG.135: 1 residues within 4Å: Chain F: D.179 Ligand excluded by PLIP PEG.144: 3 residues within 4Å: Chain G: I.213, R.214, R.216 Ligand excluded by PLIP PEG.146: 4 residues within 4Å: Chain G: F.269, F.512, L.521, K.523 Ligand excluded by PLIP PEG.154: 2 residues within 4Å: Chain G: K.366 Chain H: R.101 Ligand excluded by PLIP PEG.169: 4 residues within 4Å: Chain H: I.213, R.214, R.216, I.229 Ligand excluded by PLIP PEG.185: 4 residues within 4Å: Chain I: I.213, R.214, R.216, I.229 Ligand excluded by PLIP PEG.187: 2 residues within 4Å: Chain I: F.269, F.512 Ligand excluded by PLIP PEG.190: 3 residues within 4Å: Chain I: E.119 Chain J: G.256, N.257 Ligand excluded by PLIP PEG.199: 7 residues within 4Å: Chain I: K.248, Q.249, I.250, S.252, A.253, A.274, A.350 Ligand excluded by PLIP PEG.200: 10 residues within 4Å: Chain I: A.336, L.337, Y.338, A.389 Chain J: F.373, S.378, A.379, L.382, S.383 Ligands: 144.203 Ligand excluded by PLIP PEG.201: 4 residues within 4Å: Chain I: K.366, L.367 Chain J: R.101 Ligands: EDO.219 Ligand excluded by PLIP PEG.211: 4 residues within 4Å: Chain J: I.213, R.214, R.216, I.229 Ligand excluded by PLIP PEG.214: 4 residues within 4Å: Chain J: F.269, F.512, L.521, K.523 Ligand excluded by PLIP PEG.224: 1 residues within 4Å: Chain J: D.179 Ligand excluded by PLIP PEG.233: 3 residues within 4Å: Chain K: I.213, R.214, R.216 Ligand excluded by PLIP PEG.235: 4 residues within 4Å: Chain K: F.269, F.512, L.521, K.523 Ligand excluded by PLIP PEG.243: 2 residues within 4Å: Chain K: K.366 Chain L: R.101 Ligand excluded by PLIP PEG.258: 4 residues within 4Å: Chain L: I.213, R.214, R.216, I.229 Ligand excluded by PLIP

69 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.14: 2 residues within 4Å: Chain A: I.173, X.186 Ligand excluded by PLIP EDO.15: 4 residues within 4Å: Chain A: E.185, X.186, F.189, K.446 Ligand excluded by PLIP EDO.16: 3 residues within 4Å: Chain A: K.248, E.268, N.351 Ligand excluded by PLIP EDO.18: 2 residues within 4Å: Chain A: P.46, N.68 Ligand excluded by PLIP EDO.19: 2 residues within 4Å: Chain A: R.101 Chain B: K.366 Ligand excluded by PLIP EDO.20: 1 residues within 4Å: Chain A: L.42 Ligand excluded by PLIP EDO.39: 3 residues within 4Å: Chain B: I.173, X.186 Ligands: EDO.42 Ligand excluded by PLIP EDO.40: 4 residues within 4Å: Chain B: D.49, N.50, T.51, D.52 Ligand excluded by PLIP EDO.41: 4 residues within 4Å: Chain B: A.93, D.94, L.95 Ligands: PEG.23 Ligand excluded by PLIP EDO.42: 4 residues within 4Å: Chain B: E.185, X.186, K.446 Ligands: EDO.39 Ligand excluded by PLIP EDO.43: 5 residues within 4Å: Chain B: E.448, R.452, P.463, D.464, P.465 Ligand excluded by PLIP EDO.44: 1 residues within 4Å: Chain B: R.291 Ligand excluded by PLIP EDO.60: 1 residues within 4Å: Chain C: X.186 Ligand excluded by PLIP EDO.61: 4 residues within 4Å: Chain C: D.49, N.50, T.51, D.52 Ligand excluded by PLIP EDO.62: 5 residues within 4Å: Chain C: R.29, Q.567, I.570, G.571, E.574 Ligand excluded by PLIP EDO.63: 5 residues within 4Å: Chain C: E.448, R.452, P.463, D.464, P.465 Ligand excluded by PLIP EDO.64: 3 residues within 4Å: Chain C: D.192, Q.193, G.196 Ligand excluded by PLIP EDO.71: 1 residues within 4Å: Chain D: E.119 Ligand excluded by PLIP EDO.84: 1 residues within 4Å: Chain D: X.186 Ligand excluded by PLIP EDO.85: 7 residues within 4Å: Chain C: A.336, L.337 Chain D: F.373, S.378, A.379, L.382 Ligands: 144.70 Ligand excluded by PLIP EDO.86: 2 residues within 4Å: Chain D: N.195, E.219 Ligand excluded by PLIP EDO.87: 5 residues within 4Å: Chain D: F.175, S.176, F.178, D.179, E.513 Ligand excluded by PLIP EDO.88: 1 residues within 4Å: Chain D: T.105 Ligand excluded by PLIP EDO.103: 2 residues within 4Å: Chain E: I.173, X.186 Ligand excluded by PLIP EDO.104: 4 residues within 4Å: Chain E: E.185, X.186, F.189, K.446 Ligand excluded by PLIP EDO.105: 3 residues within 4Å: Chain E: K.248, E.268, N.351 Ligand excluded by PLIP EDO.107: 2 residues within 4Å: Chain E: P.46, N.68 Ligand excluded by PLIP EDO.108: 2 residues within 4Å: Chain E: R.101 Chain F: K.366 Ligand excluded by PLIP EDO.109: 1 residues within 4Å: Chain E: L.42 Ligand excluded by PLIP EDO.128: 3 residues within 4Å: Chain F: I.173, X.186 Ligands: EDO.131 Ligand excluded by PLIP EDO.129: 4 residues within 4Å: Chain F: D.49, N.50, T.51, D.52 Ligand excluded by PLIP EDO.130: 4 residues within 4Å: Chain F: A.93, D.94, L.95 Ligands: PEG.112 Ligand excluded by PLIP EDO.131: 4 residues within 4Å: Chain F: E.185, X.186, K.446 Ligands: EDO.128 Ligand excluded by PLIP EDO.132: 5 residues within 4Å: Chain F: E.448, R.452, P.463, D.464, P.465 Ligand excluded by PLIP EDO.133: 1 residues within 4Å: Chain F: R.291 Ligand excluded by PLIP EDO.149: 1 residues within 4Å: Chain G: X.186 Ligand excluded by PLIP EDO.150: 4 residues within 4Å: Chain G: D.49, N.50, T.51, D.52 Ligand excluded by PLIP EDO.151: 5 residues within 4Å: Chain G: R.29, Q.567, I.570, G.571, E.574 Ligand excluded by PLIP EDO.152: 5 residues within 4Å: Chain G: E.448, R.452, P.463, D.464, P.465 Ligand excluded by PLIP EDO.153: 3 residues within 4Å: Chain G: D.192, Q.193, G.196 Ligand excluded by PLIP EDO.160: 1 residues within 4Å: Chain H: E.119 Ligand excluded by PLIP EDO.173: 1 residues within 4Å: Chain H: X.186 Ligand excluded by PLIP EDO.174: 7 residues within 4Å: Chain G: A.336, L.337 Chain H: F.373, S.378, A.379, L.382 Ligands: 144.159 Ligand excluded by PLIP EDO.175: 2 residues within 4Å: Chain H: N.195, E.219 Ligand excluded by PLIP EDO.176: 5 residues within 4Å: Chain H: F.175, S.176, F.178, D.179, E.513 Ligand excluded by PLIP EDO.177: 1 residues within 4Å: Chain H: T.105 Ligand excluded by PLIP EDO.192: 2 residues within 4Å: Chain I: I.173, X.186 Ligand excluded by PLIP EDO.193: 4 residues within 4Å: Chain I: E.185, X.186, F.189, K.446 Ligand excluded by PLIP EDO.194: 3 residues within 4Å: Chain I: K.248, E.268, N.351 Ligand excluded by PLIP EDO.196: 2 residues within 4Å: Chain I: P.46, N.68 Ligand excluded by PLIP EDO.197: 2 residues within 4Å: Chain I: R.101 Chain J: K.366 Ligand excluded by PLIP EDO.198: 1 residues within 4Å: Chain I: L.42 Ligand excluded by PLIP EDO.217: 3 residues within 4Å: Chain J: I.173, X.186 Ligands: EDO.220 Ligand excluded by PLIP EDO.218: 4 residues within 4Å: Chain J: D.49, N.50, T.51, D.52 Ligand excluded by PLIP EDO.219: 4 residues within 4Å: Chain J: A.93, D.94, L.95 Ligands: PEG.201 Ligand excluded by PLIP EDO.220: 4 residues within 4Å: Chain J: E.185, X.186, K.446 Ligands: EDO.217 Ligand excluded by PLIP EDO.221: 5 residues within 4Å: Chain J: E.448, R.452, P.463, D.464, P.465 Ligand excluded by PLIP EDO.222: 1 residues within 4Å: Chain J: R.291 Ligand excluded by PLIP EDO.238: 1 residues within 4Å: Chain K: X.186 Ligand excluded by PLIP EDO.239: 4 residues within 4Å: Chain K: D.49, N.50, T.51, D.52 Ligand excluded by PLIP EDO.240: 5 residues within 4Å: Chain K: R.29, Q.567, I.570, G.571, E.574 Ligand excluded by PLIP EDO.241: 5 residues within 4Å: Chain K: E.448, R.452, P.463, D.464, P.465 Ligand excluded by PLIP EDO.242: 3 residues within 4Å: Chain K: D.192, Q.193, G.196 Ligand excluded by PLIP EDO.249: 1 residues within 4Å: Chain L: E.119 Ligand excluded by PLIP EDO.262: 1 residues within 4Å: Chain L: X.186 Ligand excluded by PLIP EDO.263: 7 residues within 4Å: Chain K: A.336, L.337 Chain L: F.373, S.378, A.379, L.382 Ligands: 144.248 Ligand excluded by PLIP EDO.264: 2 residues within 4Å: Chain L: N.195, E.219 Ligand excluded by PLIP EDO.265: 5 residues within 4Å: Chain L: F.175, S.176, F.178, D.179, E.513 Ligand excluded by PLIP EDO.266: 1 residues within 4Å: Chain L: T.105 Ligand excluded by PLIP

12 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.17: 4 residues within 4Å: Chain A: F.35, P.209 Chain C: D.592, T.594 2 PLIP interactions: 2 interactions with chain C Water bridges: C:K.590, C:T.594 PGE.45: 3 residues within 4Å: Chain B: F.35 Chain F: D.592, T.594 1 PLIP interactions: 1 interactions with chain F Water bridges: F:D.592 PGE.66: 4 residues within 4Å: Chain C: F.35, P.209 Chain H: D.592, T.594 No protein-ligand interaction detected (PLIP) PGE.79: 4 residues within 4Å: Chain D: P.148, P.209 Chain I: D.592, T.594 1 PLIP interactions: 1 interactions with chain I Water bridges: I:T.594 PGE.106: 4 residues within 4Å: Chain E: F.35, P.209 Chain G: D.592, T.594 3 PLIP interactions: 3 interactions with chain G Water bridges: G:K.590, G:D.592, G:T.594 PGE.134: 3 residues within 4Å: Chain F: F.35 Chain J: D.592, T.594 1 PLIP interactions: 1 interactions with chain J Water bridges: J:T.594 PGE.155: 4 residues within 4Å: Chain G: F.35, P.209 Chain L: D.592, T.594 No protein-ligand interaction detected (PLIP) PGE.168: 4 residues within 4Å: Chain A: D.592, T.594 Chain H: P.148, P.209 1 PLIP interactions: 1 interactions with chain A Water bridges: A:T.594 PGE.195: 4 residues within 4Å: Chain I: F.35, P.209 Chain K: D.592, T.594 2 PLIP interactions: 2 interactions with chain K Water bridges: K:K.590, K:D.592 PGE.223: 3 residues within 4Å: Chain B: D.592, T.594 Chain J: F.35 1 PLIP interactions: 1 interactions with chain B Water bridges: B:T.594 PGE.244: 4 residues within 4Å: Chain D: D.592, T.594 Chain K: F.35, P.209 No protein-ligand interaction detected (PLIP) PGE.257: 4 residues within 4Å: Chain E: D.592, T.594 Chain L: P.148, P.209 1 PLIP interactions: 1 interactions with chain E Water bridges: E:T.594

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Isupov, M.N. et al., R396W mutant of the vanadium-dependent bromoperoxidase from Corallina pilulifera. To Be Published

Release Date

2023-02-01

Peptides

Vanadium-dependent bromoperoxidase: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

B
BBB

C
CCC

D
DDD

E
AAA

F
BBB

G
CCC

H
DDD

I
AAA

J
BBB

K
CCC

L
DDD

Vanadium-dependent bromoperoxidase