- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.93 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x DQE: ethyl 5-pyridin-4-yl-1~{H}-indole-2-carboxylate(Non-covalent)
- 3 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
HEM.2: 34 residues within 4Å:- Chain A: S.68, M.101, L.102, H.109, R.113, F.120, I.164, L.167, M.249, L.250, A.253, G.254, T.257, T.258, S.261, V.292, P.297, V.298, F.301, R.303, Y.326, G.353, F.354, G.355, G.356, A.359, H.360, Y.361, C.362, I.363, G.364, L.367, A.368, I.372
23 PLIP interactions:22 interactions with chain A, 1 Ligand-Water interactions- Hydrophobic interactions: A:L.102, A:F.120, A:L.250, A:A.253, A:P.297, A:F.301, A:Y.326, A:F.354, A:I.363, A:I.363, A:L.367, A:A.368
- Hydrogen bonds: A:G.356, A:G.356
- Water bridges: A:R.303, A:H.360
- Salt bridges: A:H.109, A:R.113, A:R.303, A:H.360
- pi-Stacking: A:F.354
- Metal complexes: A:C.362, H2O.3
HEM.13: 34 residues within 4Å:- Chain B: M.101, L.102, H.109, R.113, F.120, I.164, L.167, M.249, L.250, A.253, G.254, T.257, T.258, S.261, V.292, P.297, V.298, F.301, R.303, Y.326, G.353, F.354, G.355, G.356, A.359, H.360, Y.361, C.362, I.363, G.364, L.367, A.368, I.372
- Ligands: DQE.12
18 PLIP interactions:18 interactions with chain B,- Hydrophobic interactions: B:L.102, B:F.120, B:A.253, B:P.297, B:F.301, B:Y.326, B:F.354, B:I.363, B:L.367
- Hydrogen bonds: B:Y.326
- Water bridges: B:G.356, B:H.360
- Salt bridges: B:H.109, B:R.113, B:R.303, B:H.360
- pi-Stacking: B:F.354
- Metal complexes: B:C.362
HEM.19: 34 residues within 4Å:- Chain C: V.81, M.101, L.102, H.109, R.113, F.120, I.164, L.167, M.249, L.250, A.253, G.254, T.257, T.258, S.261, V.292, P.297, V.298, F.301, R.303, Y.326, G.353, F.354, G.355, A.359, H.360, Y.361, C.362, I.363, G.364, L.367, A.368, I.372
- Ligands: DQE.18
18 PLIP interactions:18 interactions with chain C,- Hydrophobic interactions: C:F.120, C:L.250, C:A.253, C:P.297, C:F.301, C:F.301, C:Y.326, C:F.354, C:I.363, C:I.363, C:L.367
- Hydrogen bonds: C:Y.326
- Salt bridges: C:H.109, C:R.113, C:R.303, C:H.360
- pi-Stacking: C:F.354
- Metal complexes: C:C.362
- 15 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 3 residues within 4Å:- Chain A: S.4, P.5, W.38
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.4, A:W.38
SO4.4: 2 residues within 4Å:- Chain A: A.17, R.396
5 PLIP interactions:5 interactions with chain A- Water bridges: A:A.17, A:R.396, A:R.396, A:R.396
- Salt bridges: A:R.396
SO4.5: 4 residues within 4Å:- Chain A: R.135, K.138, Q.162, Q.172
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.172
- Salt bridges: A:R.135
SO4.6: 3 residues within 4Å:- Chain A: E.66, R.69, H.70
3 PLIP interactions:3 interactions with chain A- Water bridges: A:E.66
- Salt bridges: A:R.69, A:H.70
SO4.7: 3 residues within 4Å:- Chain A: R.113, S.117, I.363
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.117, A:S.117
- Water bridges: A:R.113
- Salt bridges: A:R.113
SO4.8: 4 residues within 4Å:- Chain A: R.69, H.70, S.71, D.72
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.71, A:S.71, A:D.72, A:D.72
SO4.9: 4 residues within 4Å:- Chain A: H.272, P.273, D.274, Q.275
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:H.272, A:D.274, A:Q.275
- Water bridges: A:Q.275, A:Q.275
- Salt bridges: A:H.272
SO4.14: 5 residues within 4Å:- Chain B: P.16, R.84, K.86, N.87, R.396
11 PLIP interactions:11 interactions with chain B- Hydrogen bonds: B:N.87
- Water bridges: B:R.84, B:R.84, B:N.87, B:N.87, B:D.88, B:R.396, B:R.396, B:R.396, B:R.396
- Salt bridges: B:R.396
SO4.15: 2 residues within 4Å:- Chain B: A.17, R.396
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:R.396
SO4.16: 8 residues within 4Å:- Chain B: V.335, F.336, Q.337, R.346, N.347, P.348, N.349, P.350
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:V.335, B:Q.337
- Water bridges: B:N.347, B:N.347
- Salt bridges: B:R.346
SO4.17: 3 residues within 4Å:- Chain B: P.44, G.45, H.51
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:G.45
- Salt bridges: B:H.51
SO4.20: 5 residues within 4Å:- Chain C: P.16, K.86, N.87, E.189, R.396
7 PLIP interactions:7 interactions with chain C- Hydrogen bonds: C:N.87, C:N.87
- Water bridges: C:R.84, C:R.84, C:D.88, C:R.396
- Salt bridges: C:R.396
SO4.21: 2 residues within 4Å:- Chain C: A.17, R.396
1 PLIP interactions:1 interactions with chain C- Salt bridges: C:R.396
SO4.22: 4 residues within 4Å:- Chain C: H.272, P.273, D.274, Q.275
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:D.274, C:D.274, C:Q.275, C:Q.275
- Water bridges: C:F.342
SO4.23: 3 residues within 4Å:- Chain C: P.44, G.45, H.51
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:G.45
- Water bridges: C:H.51
- Salt bridges: C:H.51
- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.10: 3 residues within 4Å:- Chain A: F.336, Q.337, R.346
Ligand excluded by PLIPCL.11: 3 residues within 4Å:- Chain A: R.91, E.95, R.98
Ligand excluded by PLIPCL.24: 3 residues within 4Å:- Chain C: A.90, R.91, E.92
Ligand excluded by PLIPCL.25: 4 residues within 4Å:- Chain C: F.336, R.346, P.348, P.350
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Katariya, M.M. et al., Structure Based Discovery of Inhibitors of CYP125 and CYP142 from Mycobacterium tuberculosis. Chemistry (2023)
- Release Date
- 2023-02-01
- Peptides
- Steroid C26-monooxygenase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.93 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x DQE: ethyl 5-pyridin-4-yl-1~{H}-indole-2-carboxylate(Non-covalent)
- 3 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 15 x SO4: SULFATE ION(Non-functional Binders)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Katariya, M.M. et al., Structure Based Discovery of Inhibitors of CYP125 and CYP142 from Mycobacterium tuberculosis. Chemistry (2023)
- Release Date
- 2023-02-01
- Peptides
- Steroid C26-monooxygenase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C