SMTL ID : 7r0l.1

Structure of the FK1 domain of the FKBP51 G64S variant in complex with SAFit1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

monomer

Ligands

1 x GY1: 2-[3-[(1~{R})-1-[(2~{S})-1-[(2~{S})-2-cyclohexyl-2-(3,4,5-trimethoxyphenyl)ethanoyl]piperidin-2-yl]carbonyloxy-3-(3,4-dimethoxyphenyl)propyl]phenoxy]ethanoic acid(Non-covalent)

GY1.1: 24 residues within 4Å: Chain A: Y.45, G.47, K.48, L.49, K.54, F.55, D.56, S.58, H.59, F.65, V.66, F.67, G.72, Q.73, V.74, I.75, W.78, A.100, Y.101, S.106, K.109, I.110, L.116, F.118 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.45, A:D.56, A:F.65, A:F.65, A:W.78, A:W.78, A:K.109 Hydrogen bonds: A:I.75, A:Y.101 pi-Cation interactions: A:K.109

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.2: 8 residues within 4Å: Chain A: R.27, K.46, D.60, R.61, I.90, E.119, E.121 Ligands: GOL.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.46 Salt bridges: A:R.27, A:D.60, A:E.121

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: P.35, M.36, D.39, F.125, G.127 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:M.36, A:D.39, A:D.39 GOL.4: 11 residues within 4Å: Chain A: H.44, Y.45, K.46, H.59, D.60, R.61, I.90, E.119, I.120, E.121 Ligands: EPE.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.60, A:D.60, A:D.60, A:R.61, A:R.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lerma Romero, J.A. et al., Binding pocket stabilization by high-throughput screening of yeast display libraries. Front Mol Biosci (2022)

Release Date

2022-11-16

Peptides

Peptidyl-prolyl cis-trans isomerase FKBP5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidyl-prolyl cis-trans isomerase FKBP5

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