SMTL ID : 7r0p.1

CRYSTAL STRUCTURE OF E.coli ALCOHOL DEHYDROGENASE - FucO MUTANT F254I COMPLEXED WITH FE, NAD+, AND ETHYLENE GLYCOL

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 39 residues within 4Å: Chain A: D.39, T.41, L.42, C.45, V.47, P.70, N.71, P.72, G.97, G.98, S.99, P.100, D.102, K.105, T.140, T.141, T.144, A.146, T.149, N.151, Y.152, V.153, K.162, M.181, M.182, G.184, M.185, P.186, L.189, T.193, D.196, H.200, I.254, H.263, H.267, H.277 Ligands: EDO.2, FE.5, EDO.6 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:D.39, A:T.41, A:N.71, A:G.97, A:G.98, A:S.99, A:S.99, A:D.102, A:K.105, A:T.140, A:T.141, A:T.149, A:N.151, A:K.162, A:M.185 Water bridges: A:N.71, A:D.102, A:T.144, A:V.153, A:V.153, A:G.184, A:G.278 NAD.11: 39 residues within 4Å: Chain B: D.39, T.41, L.42, C.45, V.47, P.70, N.71, P.72, G.97, G.98, S.99, P.100, D.102, K.105, T.140, T.141, T.144, A.146, T.149, N.151, Y.152, V.153, K.162, M.181, M.182, G.184, M.185, P.186, L.189, T.193, H.200, I.254, H.263, H.267, H.277, G.278 Ligands: EDO.12, FE.18, EDO.19 23 PLIP interactions: 23 interactions with chain B Hydrogen bonds: B:D.39, B:T.41, B:T.41, B:N.71, B:G.97, B:G.98, B:S.99, B:S.99, B:K.105, B:T.140, B:T.141, B:T.141, B:T.149, B:T.149, B:K.162, B:M.185 Water bridges: B:D.39, B:N.71, B:D.102, B:T.144, B:V.153, B:V.153, B:G.184

17 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 8 residues within 4Å: Chain A: L.189, A.192, T.193, P.276, H.277, G.278, V.279 Ligands: NAD.1 Ligand excluded by PLIP EDO.3: 6 residues within 4Å: Chain A: V.43, V.48, A.49, T.52, W.62, I.64 Ligand excluded by PLIP EDO.4: 9 residues within 4Å: Chain A: E.123, R.161, K.162, F.163, V.164, D.359, D.360, V.361, C.362 Ligand excluded by PLIP EDO.6: 7 residues within 4Å: Chain A: D.39, K.40, T.41, V.68, V.69, P.70 Ligands: NAD.1 Ligand excluded by PLIP EDO.7: 8 residues within 4Å: Chain A: T.73, I.74, T.75, R.120, T.155, D.156, E.157, E.158 Ligand excluded by PLIP EDO.8: 6 residues within 4Å: Chain A: R.290, A.293, E.317, R.320, N.321, V.324 Ligand excluded by PLIP EDO.9: 7 residues within 4Å: Chain A: Y.291, F.295, R.368, E.369, A.370, T.371, D.374 Ligand excluded by PLIP EDO.10: 7 residues within 4Å: Chain A: P.187, A.188, A.191, V.233, V.334, G.335, I.336 Ligand excluded by PLIP EDO.12: 8 residues within 4Å: Chain B: L.189, A.192, T.193, P.276, H.277, G.278, V.279 Ligands: NAD.11 Ligand excluded by PLIP EDO.13: 3 residues within 4Å: Chain B: K.50, D.53, K.54 Ligand excluded by PLIP EDO.14: 6 residues within 4Å: Chain B: P.187, A.188, A.191, V.233, V.334, G.335 Ligand excluded by PLIP EDO.15: 9 residues within 4Å: Chain B: R.16, D.183, K.190, S.232, G.235, D.236, K.237, A.239, G.240 Ligand excluded by PLIP EDO.16: 4 residues within 4Å: Chain B: P.351, A.352, Q.355, L.372 Ligand excluded by PLIP EDO.17: 8 residues within 4Å: Chain B: T.73, I.74, T.75, R.120, T.155, D.156, E.157, E.158 Ligand excluded by PLIP EDO.19: 7 residues within 4Å: Chain B: D.39, K.40, T.41, V.68, V.69, P.70 Ligands: NAD.11 Ligand excluded by PLIP EDO.20: 7 residues within 4Å: Chain A: W.211, A.212 Chain B: F.14, G.15, E.241, E.242, L.245 Ligand excluded by PLIP EDO.21: 9 residues within 4Å: Chain B: N.151, V.164, V.166, I.254, S.255, G.258, L.259, V.361, C.362 Ligand excluded by PLIP

2 x FE: FE (III) ION(Non-covalent)

FE.5: 6 residues within 4Å: Chain A: D.196, H.200, H.263, H.277, N.281 Ligands: NAD.1 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.196, A:H.200, A:H.263, A:H.277, H2O.1, H2O.8 FE.18: 6 residues within 4Å: Chain B: D.196, H.200, H.263, H.277, N.281 Ligands: NAD.11 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.196, B:H.200, B:H.263, B:H.277, H2O.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zavarise, A. et al., Structures of lactaldehyde reductase, FucO, link enzyme activity to hydrogen bond networks and conformational dynamics. Febs J. (2023)

Release Date

2022-10-19

Peptides

Lactaldehyde reductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

B
BBB

Lactaldehyde reductase

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