SMTL ID : 7r10.1

Dissociated S1 domain of Alpha Variant SARS-CoV-2 Spike bound to ACE2

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: H.376, H.380, E.404 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.376, A:H.380, A:E.404

7 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain A: N.55, Q.342 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.342, A:Q.342 NAG.3: 2 residues within 4Å: Chain A: K.28, N.92 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.28, A:N.92 NAG.4: 2 residues within 4Å: Chain A: N.324, Q.327 No protein-ligand interaction detected (PLIP) NAG.5: 2 residues within 4Å: Chain A: N.434, E.435 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.435, A:E.435 NAG.6: 3 residues within 4Å: Chain A: D.545, S.547, N.548 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.548 NAG.7: 6 residues within 4Å: Chain A: Q.83, N.105, V.109, A.195, N.196, H.197 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.109 Hydrogen bonds: A:N.196 NAG.8: 2 residues within 4Å: Chain B: G.367, N.371 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wrobel, A.G. et al., Evolution of the SARS-CoV-2 spike protein in the human host. Nat Commun (2022)

Release Date

2022-03-02

Peptides

Angiotensin-converting enzyme 2: A
Spike glycoprotein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
A

Angiotensin-converting enzyme 2

Spike glycoprotein

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