SMTL ID : 7r1o.2 (1 other biounit)

p62-ZZ domain of the human sequestosome in complex with dusquetide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

1 x ARG- ILE- VAL- PRO- ALA: Dusquetide(Non-covalent)

ARG-ILE-VAL-PRO-ALA.1: 9 residues within 4Å: Chain B: N.6, V.7, I.8, C.9, D.10, N.13, R.20, D.28, D.30 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:V.7, B:I.8 Hydrogen bonds: B:N.6, B:I.8, B:D.10, B:N.13, B:N.13, B:D.28, B:D.30, B:D.30 Salt bridges: B:D.10

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.9, C.12, C.32, C.35 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.9, A:C.12, A:C.32, A:C.35 ZN.3: 4 residues within 4Å: Chain A: C.23, C.26, H.41, H.44 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.23, A:C.26, A:H.41, A:H.44 ZN.4: 4 residues within 4Å: Chain B: C.9, C.12, C.32, C.35 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.9, B:C.12, B:C.32, B:C.35 ZN.5: 4 residues within 4Å: Chain B: C.23, C.26, H.41, H.44 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.23, B:C.26, B:H.41, B:H.44

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Y. et al., Dusquetide modulates innate immune response through binding to p62. Structure (2022)

Release Date

2022-05-18

Peptides

Sequestosome-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
CCC

B
DDD

Sequestosome-1

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