SMTL ID : 7r2g.2 (1 other biounit)

USP15 D1D2 in catalytically-competent state bound to mitoxantrone stack (isoform 2)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.166, C.169, C.215, C.218 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.166, A:C.169, A:C.215, A:C.218

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: Q.96, Q.97, D.98, F.244, G.294, Y.298 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.96, A:G.294, A:Y.298, A:Y.298

12 x MIX: 1,4-DIHYDROXY-5,8-BIS({2-[(2-HYDROXYETHYL)AMINO]ETHYL}AMINO)-9,10-ANTHRACENEDIONE(Non-covalent)(Non-functional Binders)

MIX.3: 7 residues within 4Å: Chain A: Y.290, G.291, G.296, H.297, Y.312, D.314 Ligands: MIX.4 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.290, A:Y.290, A:H.297 Hydrogen bonds: A:Y.290, A:Y.312 MIX.4: 3 residues within 4Å: Chain A: D.314 Ligands: MIX.3, MIX.5 No protein-ligand interaction detected (PLIP) MIX.5: 2 residues within 4Å: Ligands: MIX.4, MIX.6 No protein-ligand interaction detected (PLIP) MIX.6: 2 residues within 4Å: Ligands: MIX.5, MIX.7 No protein-ligand interaction detected (PLIP) MIX.7: 2 residues within 4Å: Ligands: MIX.6, MIX.8 No protein-ligand interaction detected (PLIP) MIX.8: 2 residues within 4Å: Ligands: MIX.7, MIX.9 No protein-ligand interaction detected (PLIP) MIX.9: 3 residues within 4Å: Ligands: MIX.8, MIX.10, MIX.11 No protein-ligand interaction detected (PLIP) MIX.10: 2 residues within 4Å: Ligands: MIX.9, MIX.11 No protein-ligand interaction detected (PLIP) MIX.11: 3 residues within 4Å: Ligands: MIX.9, MIX.10, MIX.12 No protein-ligand interaction detected (PLIP) MIX.12: 2 residues within 4Å: Ligands: MIX.11, MIX.13 No protein-ligand interaction detected (PLIP) MIX.13: 2 residues within 4Å: Ligands: MIX.12, MIX.14 No protein-ligand interaction detected (PLIP) MIX.14: 1 residues within 4Å: Ligands: MIX.13 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Priyanka, A. et al., Mitoxantrone stacking does not define the active or inactive state of USP15 catalytic domain. J.Struct.Biol. (2022)

Release Date

2022-06-08

Peptides

Ubiquitin carboxyl-terminal hydrolase 15: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Ubiquitin carboxyl-terminal hydrolase 15

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