SMTL ID : 7r2i.1

Human Cyclophilin D in complex with fragment

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.31 Å

Oligo State

monomer

Ligands

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 8 residues within 4Å: Chain A: R.55, F.60, M.61, Q.63, A.101, F.113, L.122, H.126 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.55 Water bridges: A:R.55 pi-Cation interactions: A:F.113

1 x UPZ: ethyl 7-methyl-2-oxidanylidene-1,3-dihydropyrazolo[1,5-a]pyrimidine-6-carboxylate(Non-covalent)

UPZ.2: 9 residues within 4Å: Chain A: H.54, R.55, Q.63, G.72, A.101, N.102, A.103, Q.111, S.149 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:R.55, A:A.101, A:Q.111 Hydrogen bonds: A:R.55, A:Q.63 Water bridges: A:R.55, A:N.102 pi-Cation interactions: A:R.55

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.3: 6 residues within 4Å: Chain A: K.25, V.93, G.94, P.95, V.97, H.131 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Silva, D.O. et al., Human Cyclophilin D in complex with fragment. To Be Published

Release Date

2023-02-15

Peptides

Peptidyl-prolyl cis-trans isomerase F, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidyl-prolyl cis-trans isomerase F, mitochondrial

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