SMTL ID : 7r2m.2 (1 other biounit)

SYNJ2BP complex with a synthetic Vangl2 peptide (9mer).

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-mer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 2 residues within 4Å: Chain A: G.133, V.134 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:V.134 CA.2: 5 residues within 4Å: Chain A: G.285, R.288, K.289, G.290, E.330 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:G.285, A:R.288, A:G.290, A:E.330, H2O.2 CA.3: 4 residues within 4Å: Chain A: M.361, G.363, G.365, D.405 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:M.361, A:G.363, A:G.365, A:D.405, A:D.405 CA.6: 3 residues within 4Å: Chain A: R.328, V.331, K.332 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:V.331

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 7 residues within 4Å: Chain A: P.189, D.193, R.218, E.222, S.377, R.378, V.381 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.218, A:S.377, A:R.378 Water bridges: A:D.193, A:E.222 GOL.5: 10 residues within 4Å: Chain A: C.216, S.217, R.218, T.219, R.262, V.305, L.342, C.345, I.346, K.349 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.262, A:K.349

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Carrasco, K. et al., SYNJ2BP PDZ domain in complex with a synthetic Vangl2 peptide. To Be Published

Release Date

2023-05-17

Peptides

Synaptojanin-2-binding protein,Annexin: A
Vangl2 peptide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Synaptojanin-2-binding protein,Annexin

Vangl2 peptide

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