SMTL ID : 7r4h.1

phospho-STING binding to adaptor protein complex-1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-2-1-1-1-mer

Ligands

1 x GLN- GLU- PRO- GLU- LEU- LEU- ILE- SEP- GLY: Stimulator of interferon genes protein(Non-covalent)

GLN-GLU-PRO-GLU-LEU-LEU-ILE-SEP-GLY.1: 14 residues within 4Å: Chain C: R.15 Chain F: K.60, R.61, Y.62, A.63, L.65, F.67, H.85, D.92, N.97, V.98, C.99, E.100, L.101 11 PLIP interactions: 10 interactions with chain F, 1 interactions with chain C Hydrophobic interactions: F:Y.62, F:A.63, F:L.65, F:F.67, F:N.97, F:E.100, F:L.101 Hydrogen bonds: F:V.98, F:E.100 Salt bridges: F:K.60, C:R.15

2 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Covalent)

GTP.2: 20 residues within 4Å: Chain B: L.9, D.10, A.11, A.12, G.13, K.14, T.15, T.16, I.26, T.29, I.30, P.31, T.32, G.53, G.54, L.55, K.111, A.144, T.145 Ligands: MG.3 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:A.11, B:A.12, B:G.13, B:K.14, B:T.15, B:T.15, B:T.15, B:T.29, B:T.29, B:T.32, B:G.54, B:K.111 Salt bridges: B:K.14 GTP.4: 20 residues within 4Å: Chain D: L.9, D.10, A.11, A.12, G.13, K.14, T.15, T.16, T.29, P.31, T.32, G.54, L.55, N.110, K.111, D.113, C.143, A.144, T.145 Ligands: MG.5 16 PLIP interactions: 16 interactions with chain D Hydrogen bonds: D:A.11, D:A.12, D:G.13, D:K.14, D:T.15, D:T.15, D:T.16, D:T.32, D:G.54, D:N.110, D:A.144, D:T.145, D:T.145 Salt bridges: D:K.14, D:K.14, D:D.113

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 5 residues within 4Å: Chain B: L.9, A.11, A.12, K.14 Ligands: GTP.2 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:L.9 MG.5: 4 residues within 4Å: Chain D: T.15, T.16, T.29 Ligands: GTP.4 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Y. et al., Clathrin-associated AP-1 controls termination of STING signalling. Nature (2022)

Release Date

2022-09-14

Peptides

AP-1 complex subunit beta-1: A
ADP-ribosylation factor 1: BD
AP-1 complex subunit gamma-1: C
AP-1 complex subunit mu-1: E
AP-1 complex subunit sigma-3: F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

D
H

C
G

E
M

F
S

AP-1 complex subunit beta-1

ADP-ribosylation factor 1

AP-1 complex subunit gamma-1

AP-1 complex subunit mu-1

AP-1 complex subunit sigma-3

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