SMTL ID : 7r5z.1

Monocot chimeric jacalin JAC1 from Oryza sativa: dirigent domain (crystal form 1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-trimer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain A: V.120 Chain B: V.120 Chain C: V.120 5 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: B:V.120, A:V.120, H2O.1, H2O.3, H2O.4

5 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: A.86, W.87, I.111 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain A: S.46, N.47 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain B: A.86, W.87, I.111 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain C: A.86, W.87, I.111 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain C: H.32, Q.41, H.81 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huwa, N. et al., The Crystal Structure of the Defense Conferring Rice Protein Os JAC1 Reveals a Carbohydrate Binding Site on the Dirigent-like Domain. Biomolecules (2022)

Release Date

2022-05-04

Peptides

Dirigent protein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Dirigent protein

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