- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.91 Å
- Oligo State
- monomer
- Ligands
- 1 x 2I7: (2R,3R,4R,5S)-2-(hydroxymethyl)-1-[(3-{[3-methyl-5-(pyrimidin-2-yl)anilino]methyl}phenyl)methyl]piperidine-3,4,5-triol(Non-covalent)
- 5 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 3 residues within 4Å:- Chain A: P.541, R.544, R.545
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.544, A:R.544, A:R.545
GOL.3: 6 residues within 4Å:- Chain A: T.208, K.209, G.210, F.301, D.302, S.316
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:T.208, A:G.210, A:D.302, A:D.302, A:S.316
- Water bridges: A:R.146, A:D.190, A:K.209
GOL.4: 4 residues within 4Å:- Chain A: D.644, S.689, P.690, K.691
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.689, A:K.691, A:K.691
- Water bridges: A:S.689
GOL.5: 3 residues within 4Å:- Chain A: W.777, E.778, G.781
No protein-ligand interaction detected (PLIP)GOL.6: 7 residues within 4Å:- Chain A: G.171, E.172, N.173, S.174, S.197, E.198, A.199
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:N.173, A:S.174, A:E.198, A:A.199
- Water bridges: A:K.69
- 11 x SO4: SULFATE ION(Non-functional Binders)
SO4.7: 2 residues within 4Å:- Chain A: G.136, G.137
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:G.137
SO4.8: 7 residues within 4Å:- Chain A: S.181, E.182, N.183, G.186, Y.187, E.188, G.189
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:E.182, A:N.183, A:E.188, A:G.189
SO4.9: 4 residues within 4Å:- Chain A: L.224, R.225, W.259, A.280
3 PLIP interactions:3 interactions with chain A- Water bridges: A:R.225, A:R.225
- Salt bridges: A:R.225
SO4.10: 1 residues within 4Å:- Chain A: W.259
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:W.259
- Water bridges: A:N.263
SO4.11: 5 residues within 4Å:- Chain A: G.369, H.370, G.466, A.467, R.470
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:H.370, A:A.467
- Water bridges: A:Y.368, A:E.468
- Salt bridges: A:H.370, A:R.470
SO4.12: 6 residues within 4Å:- Chain A: Y.407, L.452, W.458, I.459, A.460, Q.463
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.375, A:L.452, A:A.460
- Water bridges: A:Y.407, A:Y.407
SO4.13: 2 residues within 4Å:- Chain A: P.474, K.475
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:K.475
- Water bridges: A:E.476, A:Q.478, A:Q.478
SO4.14: 4 residues within 4Å:- Chain A: N.496, Y.738, K.809, H.815
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.496
- Salt bridges: A:K.809, A:H.815
SO4.15: 5 residues within 4Å:- Chain A: R.544, F.547, D.548, D.628, F.631
1 PLIP interactions:1 interactions with chain A- Water bridges: A:D.628
SO4.16: 4 residues within 4Å:- Chain A: T.578, V.579, S.580, H.581
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:T.578, A:T.578, A:V.579, A:S.580, A:S.580
- Salt bridges: A:H.581
SO4.17: 3 residues within 4Å:- Chain A: Y.745, T.749, R.759
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Y.745
- Water bridges: A:Y.762
- Salt bridges: A:R.759
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Karade, S.S. et al., Structure-Based Design of Potent Iminosugar Inhibitors of Endoplasmic Reticulum alpha-Glucosidase I with Anti-SARS-CoV-2 Activity. J.Med.Chem. (2023)
- Release Date
- 2022-07-06
- Peptides
- Chaetomium alpha glucosidase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.91 Å
- Oligo State
- monomer
- Ligands
- 1 x 2I7: (2R,3R,4R,5S)-2-(hydroxymethyl)-1-[(3-{[3-methyl-5-(pyrimidin-2-yl)anilino]methyl}phenyl)methyl]piperidine-3,4,5-triol(Non-covalent)
- 5 x GOL: GLYCEROL(Non-functional Binders)
- 11 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Karade, S.S. et al., Structure-Based Design of Potent Iminosugar Inhibitors of Endoplasmic Reticulum alpha-Glucosidase I with Anti-SARS-CoV-2 Activity. J.Med.Chem. (2023)
- Release Date
- 2022-07-06
- Peptides
- Chaetomium alpha glucosidase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A