SMTL ID : 7r6v.2 (1 other biounit)

Human EXOG complexed with dRP-containing DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.16 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: K.31, P.141, L.142, T.143 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:P.141, A:T.143, A:T.143 Salt bridges: A:K.31 Water bridges: B:K.31, B:K.31 SO4.4: 4 residues within 4Å: Chain B: K.31, P.141, L.142, T.143 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:T.143, B:T.143 Water bridges: B:P.141, B:T.143, B:T.143 Salt bridges: B:K.31

3 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain B: Q.109, N.114 Chain D: T.2, G.3 No protein-ligand interaction detected (PLIP) MG.3: 4 residues within 4Å: Chain B: T.13, G.14, T.15, E.16 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:E.16 MG.5: 4 residues within 4Å: Chain A: H.83, N.114 Chain C: T.2, G.3 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Szymanski, M.R. et al., Human EXOG possesses strong AP hydrolysis activity. To Be Published

Release Date

2022-08-24

Peptides

Nuclease EXOG, mitochondrial: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
I

Nuclease EXOG, mitochondrial

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