SMTL ID : 7r7o.2 (1 other biounit)

Structure of methyltransferase domain of Spb1 boudn to SAM

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

monomer

Ligands

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 20 residues within 4Å: Chain A: A.27, S.29, C.54, A.55, A.56, P.57, G.58, S.59, W.60, D.78, I.79, V.80, S.93, D.94, I.95, D.119, G.120, A.121, N.123, L.138 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:S.29, A:A.56, A:A.56, A:A.56, A:G.58, A:S.59, A:W.60, A:I.79, A:D.94, A:D.94, A:I.95, A:D.119, A:A.121, A:N.123, A:N.123 Water bridges: A:D.52, A:C.54, A:A.55, A:T.96 Salt bridges: A:D.119

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cruz, V.E. et al., Post-catalytic rRNA binding by the DEAD-box ATPase Spb4 and methyltransferase Spb1 guide the late nucleolar assembly of 60S ribosomes. To Be Published

Release Date

2022-06-29

Peptides

AdoMet-dependent rRNA methyltransferase SPB1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

AdoMet-dependent rRNA methyltransferase SPB1

Related Entries With Identical Sequence