SMTL ID : 7r7p.1

Immature HIV-1 CACTD-SP1 lattice with Bevirimat (BVM) and Inositol hexakisphosphate (IP6)

Coordinates

PDB Format Compare

Method

SOLID-STATE NMR

Oligo State

homo-hexamer

Ligands

1 x IHP: INOSITOL HEXAKISPHOSPHATE(Non-covalent)

IHP.1: 10 residues within 4Å: Chain A: K.15, K.84 Chain B: K.15, K.84 Chain C: K.15, K.84 Chain D: K.15 Chain F: K.15, K.84 Ligands: 2I4.2 4 PLIP interactions: 1 interactions with chain A, 1 interactions with chain D, 1 interactions with chain F, 1 interactions with chain B Salt bridges: A:K.15, D:K.15, F:K.84, B:K.84

1 x 2I4: 3alpha-[(3-carboxy-3-methylbutanoyl)oxy]-8alpha,9beta,10alpha,13alpha,17alpha,19beta-lup-20(29)-en-28-oic acid(Non-covalent)

2I4.2: 19 residues within 4Å: Chain A: K.84, L.88, M.92 Chain B: K.84, L.88, M.92 Chain C: K.84, L.88, M.92 Chain D: K.84, L.88, M.92 Chain E: K.84, L.88, M.92 Chain F: K.84, L.88, M.92 Ligands: IHP.1 12 PLIP interactions: 3 interactions with chain B, 5 interactions with chain C, 2 interactions with chain A, 1 interactions with chain F, 1 interactions with chain D Hydrophobic interactions: B:K.84, B:L.88, C:L.88, C:L.88, C:M.92, A:K.84, A:L.88, F:K.84 Salt bridges: B:K.84, C:K.84, C:K.84, D:K.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sarkar, S. et al., Structural basis of HIV-1 maturation inhibitor binding and activity. Nat Commun (2023)

Release Date

2023-02-15

Peptides

Gag polyprotein: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

C
I

D
J

E
K

F
L

Gag polyprotein

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