SMTL ID : 7r7s.1

p47-bound p97-R155H mutant with ATPgammaS

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-2-mer

Ligands

12 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)

AGS.1: 14 residues within 4Å: Chain A: D.205, I.206, G.248, T.249, G.250, K.251, T.252, L.253, I.380, I.383, G.408, A.409 Chain B: R.359, R.362 11 PLIP interactions: 10 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:G.207, A:G.207, A:G.248, A:G.250, A:K.251, A:K.251, A:T.252, A:L.253, A:D.304, B:R.359 Salt bridges: A:K.251 AGS.2: 17 residues within 4Å: Chain A: D.478, G.480, G.481, P.520, G.521, G.523, K.524, T.525, L.526, K.543, D.577, E.578, P.648, S.652, I.656, A.685 Chain B: R.635 10 PLIP interactions: 9 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:G.480, A:G.481, A:G.523, A:K.524, A:T.525, A:T.525, A:T.525, A:D.577, A:E.578, B:R.635 AGS.3: 15 residues within 4Å: Chain B: D.205, I.206, G.207, G.248, T.249, G.250, K.251, T.252, L.253, I.380, I.383, H.384, G.408, A.409 Chain C: F.360 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.207, B:G.207, B:G.248, B:G.250, B:K.251, B:T.252 AGS.4: 12 residues within 4Å: Chain B: D.478, G.480, P.520, G.521, C.522, G.523, K.524, T.525, L.526, S.652 Chain C: R.635, P.636 10 PLIP interactions: 9 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:G.480, B:P.520, B:C.522, B:K.524, B:T.525, B:T.525, B:T.525, B:L.526, B:S.652, C:R.635 AGS.5: 14 residues within 4Å: Chain C: D.205, P.247, G.248, T.249, G.250, K.251, T.252, L.253, D.304, E.305, I.380, I.383, A.409 Chain D: R.359 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:G.248, C:T.249, C:T.249, C:G.250, C:K.251, C:T.252, C:T.252, C:T.252, C:L.253 AGS.6: 16 residues within 4Å: Chain C: D.478, I.479, G.480, P.520, G.521, C.522, G.523, K.524, T.525, L.526, S.652, I.656, A.685, D.686 Chain D: R.635, P.636 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:G.480, C:K.524, C:T.525, C:T.525, C:T.525, C:S.652 Salt bridges: C:K.524 AGS.7: 12 residues within 4Å: Chain D: D.205, I.206, P.247, G.248, T.249, G.250, K.251, T.252, L.253, I.380, A.409 Chain E: R.359 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:G.248, D:T.249, D:G.250, D:K.251, D:T.252, D:T.252, D:T.252, D:L.253 Salt bridges: D:K.251 AGS.8: 16 residues within 4Å: Chain D: D.478, I.479, G.480, P.520, G.521, C.522, G.523, K.524, T.525, L.526, D.577, E.578, P.648, S.652, A.685 Chain E: R.635 10 PLIP interactions: 10 interactions with chain D Hydrogen bonds: D:G.480, D:P.520, D:C.522, D:K.524, D:T.525, D:T.525, D:T.525, D:L.526, D:E.578, D:S.652 AGS.9: 14 residues within 4Å: Chain E: D.205, I.206, G.207, G.248, T.249, G.250, K.251, T.252, I.380, I.383, H.384, G.408, A.409 Chain F: R.359 11 PLIP interactions: 10 interactions with chain E, 1 interactions with chain F Hydrogen bonds: E:G.207, E:G.207, E:G.248, E:T.249, E:G.250, E:K.251, E:K.251, E:T.252, E:T.252, F:R.359 Salt bridges: E:K.251 AGS.10: 15 residues within 4Å: Chain E: G.480, P.520, C.522, G.523, K.524, T.525, L.526, D.577, E.578, S.652, I.656, T.688 Chain F: R.635, P.636, R.638 10 PLIP interactions: 8 interactions with chain E, 2 interactions with chain F Hydrogen bonds: E:G.480, E:P.520, E:C.522, E:K.524, E:T.525, E:E.578, E:S.652, E:T.688, F:R.635, F:R.638 AGS.11: 12 residues within 4Å: Chain A: R.359 Chain F: D.205, G.208, G.248, T.249, G.250, K.251, T.252, L.253, D.304, I.380, A.409 13 PLIP interactions: 11 interactions with chain F, 2 interactions with chain A Hydrogen bonds: F:G.208, F:G.248, F:T.249, F:T.249, F:G.250, F:K.251, F:T.252, F:T.252, F:T.252, F:L.253, A:R.359, A:R.359 Salt bridges: F:K.251 AGS.12: 17 residues within 4Å: Chain A: R.635, R.638 Chain F: D.478, I.479, G.480, L.482, P.520, C.522, G.523, K.524, T.525, L.526, D.577, N.624, S.652, I.656, T.688 9 PLIP interactions: 9 interactions with chain F Hydrogen bonds: F:G.480, F:K.524, F:T.525, F:T.525, F:T.525, F:L.526, F:N.624, F:S.652, F:T.688

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nandi, P. et al., Structural and Functional Analysis of Disease-Linked p97 ATPase Mutant Complexes. Int J Mol Sci (2021)

Release Date

2021-08-04

Peptides

Transitional endoplasmic reticulum ATPase: ABCDEF
NSFL1 cofactor p47: GH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
I

H
J

Transitional endoplasmic reticulum ATPase

NSFL1 cofactor p47

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