SMTL ID : 7r7t.1

p47-bound p97-R155H mutant with ADP

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-1-mer

Ligands

12 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 12 residues within 4Å: Chain A: I.206, G.207, C.209, T.249, G.250, K.251, T.252, L.253, I.254, I.380, H.384, G.408 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.207, A:T.252, A:T.252, A:T.252, A:L.253, A:I.254 ADP.2: 11 residues within 4Å: Chain A: I.479, C.522, L.526, I.656, G.684, A.685, T.688 Chain F: R.635, P.636, G.637, R.638 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain F Hydrogen bonds: A:T.688, F:R.638 Salt bridges: F:R.638 ADP.3: 13 residues within 4Å: Chain A: R.359 Chain B: G.207, P.247, G.248, T.249, G.250, K.251, T.252, L.253, I.380, H.384, G.408, A.409 10 PLIP interactions: 7 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:G.207, B:G.248, B:T.249, B:T.249, B:G.250, B:K.251, B:T.252, A:R.239 Salt bridges: A:R.359, A:R.359 ADP.4: 10 residues within 4Å: Chain B: I.479, G.521, C.522, T.525, L.526, E.578, I.656, G.684, A.685, T.688 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.525, B:D.577, B:D.577, B:E.578 ADP.5: 12 residues within 4Å: Chain B: R.359 Chain C: G.248, T.249, G.250, K.251, T.252, L.253, D.304, I.380, H.384, G.408, A.409 6 PLIP interactions: 4 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:G.250, C:K.251, C:T.252, C:D.304, B:R.359 Salt bridges: B:R.359 ADP.6: 16 residues within 4Å: Chain B: P.636 Chain C: D.478, I.479, G.480, G.481, L.482, P.520, G.521, C.522, G.523, P.648, S.652, I.656, S.683, G.684, A.685 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:D.478, C:G.480, C:G.481, C:C.522, C:S.652, C:S.683, C:G.684, C:A.685 ADP.7: 14 residues within 4Å: Chain C: R.359 Chain D: L.243, G.245, P.246, P.247, G.248, T.249, G.250, K.251, T.252, L.253, A.346, I.369, H.384 10 PLIP interactions: 9 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:L.243, D:G.245, D:G.248, D:T.249, D:G.250, D:K.251, D:H.384, C:R.359 Salt bridges: D:K.251, D:K.251 ADP.8: 15 residues within 4Å: Chain C: R.635 Chain D: D.478, P.519, P.520, G.521, C.522, G.523, K.524, I.645, P.646, L.647, P.648, S.683, G.684, A.685 9 PLIP interactions: 8 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:D.478, D:G.521, D:C.522, D:G.523, D:K.524, D:K.524, D:G.684, D:A.685 Salt bridges: C:R.635 ADP.9: 13 residues within 4Å: Chain D: R.359 Chain E: I.206, G.248, T.249, G.250, K.251, T.252, L.253, D.304, I.380, H.384, G.408, A.409 7 PLIP interactions: 7 interactions with chain E Hydrogen bonds: E:G.207, E:G.248, E:G.250, E:T.252, E:T.252, E:L.253, E:D.304 ADP.10: 11 residues within 4Å: Chain D: R.635 Chain E: I.479, G.521, C.522, G.523, T.525, L.526, I.656, G.684, A.685, T.688 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain E Salt bridges: D:R.635, D:R.635 Hydrogen bonds: E:T.525, E:T.525 ADP.11: 14 residues within 4Å: Chain E: F.360 Chain F: D.205, I.206, G.207, G.248, T.249, G.250, K.251, T.252, L.253, D.304, I.380, H.384, A.409 8 PLIP interactions: 8 interactions with chain F Hydrogen bonds: F:I.206, F:G.248, F:G.250, F:K.251, F:T.252, F:T.252, F:D.304, F:A.409 ADP.12: 16 residues within 4Å: Chain E: R.635 Chain F: F.516, Y.517, G.518, P.519, P.520, G.521, C.522, G.523, K.524, T.525, L.527, F.575, T.623, N.624, I.645 10 PLIP interactions: 10 interactions with chain F Hydrogen bonds: F:Y.517, F:G.518, F:G.518, F:P.520, F:G.523, F:T.525, F:L.527, F:T.623, F:N.624 Salt bridges: F:K.524

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nandi, P. et al., Structural and Functional Analysis of Disease-Linked p97 ATPase Mutant Complexes. Int J Mol Sci (2021)

Release Date

2021-08-04

Peptides

Transitional endoplasmic reticulum ATPase: ABCDEF
NSFL1 cofactor p47: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
F

C
E

D
D

E
C

F
B

G
I

Transitional endoplasmic reticulum ATPase

NSFL1 cofactor p47

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