SMTL ID : 7r8o.1

Structure of the SARS-CoV-2 S 6P trimer in complex with neutralizing antibody C548

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-3-3-3-mer
Ligands
5 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
1 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
1 x NAG- NAG- BMA- MAN- FUC: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
26 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Muecksch, F. et al., Affinity maturation of SARS-CoV-2 neutralizing antibodies confers potency, breadth, and resilience to viral escape mutations. Immunity (2021)
Release Date
2021-08-04
Peptides
Spike glycoprotein: ABC
C548 Fab Heavy Chain: DFH
C548 Fab Light Chain: EGI
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
E
D
H
F
M
H
O
E
L
G
N
I
P

Spike glycoprotein

Toggle Identical (ABC)

C548 Fab Heavy Chain

Toggle Identical (DFH)

C548 Fab Light Chain

Toggle Identical (EGI)

Related Entries With Identical Sequence

7r8m.1 | 7r8n.1 | 7rkv.1 | 7s0c.1 | 7s0d.1 | 7s0e.1