SMTL ID : 7r8u.1

LOX-1 - Structural and Functional Studies of a Receptor Implicated in Atherosclerosis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-2-1-1-mer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: D.8, L.18, F.19 Chain B: I.10 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.19 GOL.2: 9 residues within 4Å: Chain A: F.19, A.55, Y.58 Chain B: F.19, A.55, I.56, Y.58, S.59 Ligands: GOL.3 No protein-ligand interaction detected (PLIP) GOL.3: 4 residues within 4Å: Chain B: D.8, L.18, F.19 Ligands: GOL.2 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:F.19 GOL.4: 7 residues within 4Å: Chain B: P.62, Y.106, L.119, A.120 Chain D: S.67, S.69, S.74 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain D Hydrogen bonds: B:A.120, D:S.67 Water bridges: D:S.69 GOL.5: 6 residues within 4Å: Chain C: K.43 Chain D: D.87, Y.89, G.104, G.105, K.107 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:K.107, D:K.107, C:K.43 Water bridges: D:Y.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ongstad, E.L. et al., Structural and functional studies of a monoclonal antibody blocking LOX-1. Commun Med (2023)

Release Date

2022-06-01

Peptides

Oxidized low-density lipoprotein receptor 1: AB
Antigen binding fragment, Vh and Ch1: C
Antibody light chain, kappa: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

B
BBB

C
HHH

D
LLL

Oxidized low-density lipoprotein receptor 1

Antigen binding fragment, Vh and Ch1

Antibody light chain, kappa