SMTL ID : 7rag.1

Structure of the CwlD amidase from Clostridioides difficile in complex with the GerS lipoprotein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-2-2-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain B: H.25, E.41, H.109, L.110 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.25, B:E.41, B:E.41, B:H.109 ZN.3: 4 residues within 4Å: Chain D: H.25, E.41, H.109, L.110 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:H.25, D:E.41, D:E.41, D:H.109

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: V.58, I.69 Chain B: L.55, S.58, S.59, Y.202 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Y.202 EDO.4: 6 residues within 4Å: Chain C: V.58, I.69 Chain D: L.55, S.58, S.59, Y.202 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:Y.202, D:Y.202

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Alves Feliciano, C. et al., A lipoprotein allosterically activates the CwlD amidase during Clostridioides difficile spore formation. Plos Genet. (2021)

Release Date

2021-09-08

Peptides

Lipoprotein: AC
Germination-specific N-acetylmuramoyl-L-alanine amidase, Autolysin: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Lipoprotein

Germination-specific N-acetylmuramoyl-L-alanine amidase, Autolysin