SMTL ID : 7rar.1

Structure of Q67H mutant of disulfide stabilized HIV-1 CA hexamer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-hexamer

Ligands

36 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 4 residues within 4Å: Chain A: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.2: 1 residues within 4Å: Chain A: P.38 Ligand excluded by PLIP IOD.3: 2 residues within 4Å: Chain A: P.17, R.18 Ligand excluded by PLIP IOD.4: 5 residues within 4Å: Chain A: E.35, R.173 Chain E: G.60, G.61, Q.63 Ligand excluded by PLIP IOD.5: 1 residues within 4Å: Chain A: P.17 Ligand excluded by PLIP IOD.6: 2 residues within 4Å: Chain A: R.173 Chain E: H.67 Ligand excluded by PLIP IOD.11: 4 residues within 4Å: Chain B: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.12: 1 residues within 4Å: Chain B: P.38 Ligand excluded by PLIP IOD.13: 2 residues within 4Å: Chain B: P.17, R.18 Ligand excluded by PLIP IOD.14: 5 residues within 4Å: Chain B: E.35, R.173 Chain F: G.60, G.61, Q.63 Ligand excluded by PLIP IOD.15: 1 residues within 4Å: Chain B: P.17 Ligand excluded by PLIP IOD.16: 2 residues within 4Å: Chain B: R.173 Chain F: H.67 Ligand excluded by PLIP IOD.21: 4 residues within 4Å: Chain C: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.22: 1 residues within 4Å: Chain C: P.38 Ligand excluded by PLIP IOD.23: 2 residues within 4Å: Chain C: P.17, R.18 Ligand excluded by PLIP IOD.24: 5 residues within 4Å: Chain C: E.35, R.173 Chain D: G.60, G.61, Q.63 Ligand excluded by PLIP IOD.25: 1 residues within 4Å: Chain C: P.17 Ligand excluded by PLIP IOD.26: 2 residues within 4Å: Chain C: R.173 Chain D: H.67 Ligand excluded by PLIP IOD.31: 4 residues within 4Å: Chain D: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.32: 1 residues within 4Å: Chain D: P.38 Ligand excluded by PLIP IOD.33: 2 residues within 4Å: Chain D: P.17, R.18 Ligand excluded by PLIP IOD.34: 5 residues within 4Å: Chain B: G.60, G.61, Q.63 Chain D: E.35, R.173 Ligand excluded by PLIP IOD.35: 1 residues within 4Å: Chain D: P.17 Ligand excluded by PLIP IOD.36: 2 residues within 4Å: Chain B: H.67 Chain D: R.173 Ligand excluded by PLIP IOD.41: 4 residues within 4Å: Chain E: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.42: 1 residues within 4Å: Chain E: P.38 Ligand excluded by PLIP IOD.43: 2 residues within 4Å: Chain E: P.17, R.18 Ligand excluded by PLIP IOD.44: 5 residues within 4Å: Chain C: G.60, G.61, Q.63 Chain E: E.35, R.173 Ligand excluded by PLIP IOD.45: 1 residues within 4Å: Chain E: P.17 Ligand excluded by PLIP IOD.46: 2 residues within 4Å: Chain C: H.67 Chain E: R.173 Ligand excluded by PLIP IOD.51: 4 residues within 4Å: Chain F: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.52: 1 residues within 4Å: Chain F: P.38 Ligand excluded by PLIP IOD.53: 2 residues within 4Å: Chain F: P.17, R.18 Ligand excluded by PLIP IOD.54: 5 residues within 4Å: Chain A: G.60, G.61, Q.63 Chain F: E.35, R.173 Ligand excluded by PLIP IOD.55: 1 residues within 4Å: Chain F: P.17 Ligand excluded by PLIP IOD.56: 2 residues within 4Å: Chain A: H.67 Chain F: R.173 Ligand excluded by PLIP

24 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 2 residues within 4Å: Chain A: N.57 Chain F: R.173 Ligand excluded by PLIP CL.8: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain A: R.162, Q.219 Chain E: M.144 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain A: V.27, G.60, H.62 Ligand excluded by PLIP CL.17: 2 residues within 4Å: Chain B: N.57 Chain D: R.173 Ligand excluded by PLIP CL.18: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.19: 3 residues within 4Å: Chain B: R.162, Q.219 Chain F: M.144 Ligand excluded by PLIP CL.20: 3 residues within 4Å: Chain B: V.27, G.60, H.62 Ligand excluded by PLIP CL.27: 2 residues within 4Å: Chain C: N.57 Chain E: R.173 Ligand excluded by PLIP CL.28: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.29: 3 residues within 4Å: Chain C: R.162, Q.219 Chain D: M.144 Ligand excluded by PLIP CL.30: 3 residues within 4Å: Chain C: V.27, G.60, H.62 Ligand excluded by PLIP CL.37: 2 residues within 4Å: Chain C: R.173 Chain D: N.57 Ligand excluded by PLIP CL.38: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.39: 3 residues within 4Å: Chain B: M.144 Chain D: R.162, Q.219 Ligand excluded by PLIP CL.40: 3 residues within 4Å: Chain D: V.27, G.60, H.62 Ligand excluded by PLIP CL.47: 2 residues within 4Å: Chain A: R.173 Chain E: N.57 Ligand excluded by PLIP CL.48: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.49: 3 residues within 4Å: Chain C: M.144 Chain E: R.162, Q.219 Ligand excluded by PLIP CL.50: 3 residues within 4Å: Chain E: V.27, G.60, H.62 Ligand excluded by PLIP CL.57: 2 residues within 4Å: Chain B: R.173 Chain F: N.57 Ligand excluded by PLIP CL.58: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.59: 3 residues within 4Å: Chain A: M.144 Chain F: R.162, Q.219 Ligand excluded by PLIP CL.60: 3 residues within 4Å: Chain F: V.27, G.60, H.62 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bester, S.M. et al., Structural and Mechanistic Bases of Viral Resistance to HIV-1 Capsid Inhibitor Lenacapavir. Mbio (2022)

Release Date

2022-09-28

Peptides

Capsid protein p24: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
C

C
C

D
C

E
C

F
C

Capsid protein p24

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