SMTL ID : 7ras.1

Structure of TRPV3 in complex with osthole

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

8 x A0O: 7-methoxy-8-(3-methylbut-2-enyl)chromen-2-one(Non-covalent)

A0O.1: 8 residues within 4Å: Chain A: S.444, W.493, C.496, I.497, K.500, E.501, Y.565, M.706 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.501 Salt bridges: A:K.500 A0O.2: 8 residues within 4Å: Chain A: H.417, L.420, T.421, H.426, H.430, W.433, R.693, R.696 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:R.693 Salt bridges: A:H.426 A0O.3: 8 residues within 4Å: Chain B: S.444, W.493, C.496, I.497, K.500, E.501, Y.565, M.706 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.501 A0O.4: 8 residues within 4Å: Chain B: H.417, L.420, T.421, H.426, H.430, W.433, R.693, R.696 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:R.693 Salt bridges: B:H.426 A0O.5: 7 residues within 4Å: Chain C: S.444, C.496, I.497, K.500, E.501, Y.565, M.706 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:E.501 A0O.6: 8 residues within 4Å: Chain C: H.417, L.420, T.421, H.426, H.430, W.433, R.693, R.696 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:R.693 Salt bridges: C:H.426 A0O.7: 8 residues within 4Å: Chain D: S.444, W.493, C.496, I.497, K.500, E.501, Y.565, M.706 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:E.501 A0O.8: 8 residues within 4Å: Chain D: H.417, L.420, T.421, H.426, H.430, W.433, R.693, R.696 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:R.693 Salt bridges: D:H.426

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Neuberger, A. et al., Structural mechanism of TRPV3 channel inhibition by the plant-derived coumarin osthole. Embo Rep. (2021)

Release Date

2021-09-08

Peptides

Transient receptor potential cation channel subfamily V member 3: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
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Transient receptor potential cation channel subfamily V member 3

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