SMTL ID : 7rbq.1

Co-crystal structure of human PRMT9 in complex with MT556 inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x 44T: 7-[5-S-(4-{[(4-ethylpyridin-3-yl)methyl]amino}butyl)-5-thio-beta-D-ribofuranosyl]-7H-pyrrolo[2,3-d]pyrimidin-4-amine(Non-covalent)

44T.1: 22 residues within 4Å: Chain A: E.24, W.26, H.27, M.30, G.59, C.80, E.81, L.82, M.86, T.108, K.109, S.110, E.129, T.130, V.131, D.132, A.133, E.138, S.143, T.298, W.306, E.307 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:T.130, A:V.131, A:T.298, A:W.306, A:W.306 Hydrogen bonds: A:G.59, A:L.82, A:S.110, A:S.110, A:S.143, A:E.307 pi-Stacking: A:W.26

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: E.100, I.103, K.104, L.105 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.100, A:L.105

5 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.3: 2 residues within 4Å: Chain A: R.25, W.26 No protein-ligand interaction detected (PLIP) UNX.4: 3 residues within 4Å: Chain A: S.83, K.84, T.85 No protein-ligand interaction detected (PLIP) UNX.5: 2 residues within 4Å: Chain A: F.178, W.285 No protein-ligand interaction detected (PLIP) UNX.6: 4 residues within 4Å: Chain A: E.183, C.184, A.185, G.237 No protein-ligand interaction detected (PLIP) UNX.7: 2 residues within 4Å: Chain A: E.578, Q.580 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zeng, H. et al., Co-crystal structure of human PRMT9 in complex with MT556 inhibitor. To Be Published

Release Date

2021-08-11

Peptides

Protein arginine N-methyltransferase 9: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein arginine N-methyltransferase 9